| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,858,701 | A→T | 7.8% | intergenic (‑207/+18) | PP_mr50 ← / ← ligA | Bacteria_large_SRP ncRNA/DNA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,858,701 | 0 | A | T | 7.8% | 250.5 / 7.8 | 86 | intergenic (‑207/+18) | PP_mr50/ligA | Bacteria_large_SRP ncRNA/DNA ligase |
| Reads supporting (aligned to +/- strand): ref base A (36/42); new base T (3/4); total (40/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 | |||||||||||
GATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATGGGTCTT > NC_002947/4858556‑4858847 | gATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAg < 4:356637/149‑1 (MQ=255) tACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAggg < 3:85792/149‑1 (MQ=255) aCAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAgggg > 7:77486/1‑149 (MQ=255) cAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAggggg < 4:303647/149‑1 (MQ=255) cAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAgggg < 4:381891/148‑1 (MQ=255) ccACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGCCCGCGCCGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCCCAGGGGGGCa > 6:422186/1‑149 (MQ=255) cTGCGGCAGAAAACGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCTGTGGGGGGCaact < 5:131396/149‑4 (MQ=39) cTGCGGCAGAAAAAGTCCTCCTTTCTCAATGACCTGTCAGCGTCGAGATGGCCGGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGGTGCCCCCCTGTGGGGGGCaact < 8:147884/149‑4 (MQ=37) cTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAgggg < 1:88530/142‑1 (MQ=255) cTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAgggg > 2:88530/1‑142 (MQ=255) cTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACgg < 6:161000/149‑1 (MQ=255) ggCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGc < 3:146147/149‑1 (MQ=255) aGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑a < 4:121292/149‑1 (MQ=255) gAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGTACGGATGCCT‑Ag < 5:105199/149‑1 (MQ=255) gAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGcc > 1:193623/1‑146 (MQ=255) aaaaaGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACACGCTCCTACGGGCTACCGCGCATGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGCGGGGCACGGATGCCT‑AGa > 5:38105/1‑149 (MQ=255) aaaGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCACTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGAc > 1:308604/1‑149 (MQ=255) gTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCt < 3:152860/149‑1 (MQ=255) tcatcaTTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTa > 1:180237/1‑149 (MQ=255) atcatTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATg > 8:300832/1‑149 (MQ=255) tttCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCt > 5:42128/1‑149 (MQ=255) tctcAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGt > 3:46118/1‑149 (MQ=255) tcAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTc > 2:180507/1‑149 (MQ=255) cAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCg > 2:31205/1‑149 (MQ=255) aaTGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAAGCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCg < 4:361357/148‑1 (MQ=255) aaTGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCg < 4:355347/148‑1 (MQ=255) aaTGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCg < 4:361944/148‑1 (MQ=255) aTGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGc < 2:180237/149‑1 (MQ=255) aCTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCa < 4:46118/148‑1 (MQ=255) aCTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAg < 8:87730/149‑1 (MQ=255) gttGTCTGGGTCGAGTTGGCCTGTACGGGC‑GTCTTCGCGGTTAAACCGGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAg < 6:42128/147‑1 (MQ=39) aGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAAtgt < 4:133559/148‑1 (MQ=255) aGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAAtgt < 2:308604/148‑1 (MQ=255) ggTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGcc < 3:224245/114‑1 (MQ=255) ggTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGcc > 4:224245/1‑114 (MQ=255) gaTGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAgg > 4:273296/1‑148 (MQ=255) gACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTc < 4:129557/149‑1 (MQ=255) c‑cTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTAt < 3:72540/104‑1 (MQ=255) c‑cTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTAt > 4:72540/1‑104 (MQ=255) c‑cTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCAc > 5:277998/1‑149 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGAcc < 4:61539/95‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGAcc > 3:61539/1‑95 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAAtgt < 2:326849/121‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAAtgt > 1:326849/1‑121 (MQ=255) gcgGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTcaca < 5:26688/149‑1 (MQ=255) gcgGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTcac < 6:203844/148‑1 (MQ=255) aCCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTc > 5:122733/1‑149 (MQ=255) cccGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCg > 2:236193/1‑149 (MQ=255) ccGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCgg < 1:242415/149‑1 (MQ=255) ccTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGgccgcc > 4:8961/1‑149 (MQ=255) cTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCt > 2:264361/1‑149 (MQ=255) tACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCtt > 5:212645/1‑149 (MQ=255) aCGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTg > 6:202600/1‑149 (MQ=255) cGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGATGACAGTTGCCCCCCTGAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCTGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCGTTg < 6:38105/148‑1 (MQ=255) gACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCa < 3:357021/87‑1 (MQ=255) gACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCa > 4:357021/1‑87 (MQ=255) aCCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCt > 4:37009/1‑149 (MQ=255) aCCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCt < 6:122733/149‑1 (MQ=255) gcgcAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCg < 1:264361/149‑1 (MQ=255) aaGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCTGAGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAg > 1:297166/1‑149 (MQ=255) aaGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAgg < 7:321794/149‑1 (MQ=255) aaGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAgg < 2:297166/149‑1 (MQ=255) gaagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGccac > 5:329212/1‑149 (MQ=255) gaagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGcca < 1:180507/148‑1 (MQ=255) aagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAg < 8:349781/128‑1 (MQ=255) aagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAg > 7:349781/1‑128 (MQ=255) aagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCCGGCCCAGccgc > 4:304313/1‑146 (MQ=255) aagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAgg > 4:194503/1‑139 (MQ=255) aagaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAgg < 3:194503/139‑1 (MQ=255) agaCAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGccacc < 2:193623/148‑1 (MQ=255) ccgtGCCCCCCTGTGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGc > 5:219078/4‑148 (MQ=255) cgtGCCCCCCTGTGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCaa < 1:255525/95‑1 (MQ=255) cgtGCCCCCCTGTGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCaa > 2:255525/3‑97 (MQ=255) tttccccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAAt < 8:77486/146‑1 (MQ=255) gtGCCCCCCTGTGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAAt > 4:293878/2‑149 (MQ=255) gCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATg < 3:37009/148‑1 (MQ=255) cggcccACAGGGGGGCACGGATGCAT‑AGTCCGCTATGTCCTGTTCGGCCAGGAATGTGACATAGGCATCTTCGTCCAGGTCCTTGACTGCGATCTGGGCCTGCTTGGGCAGCTTGGTGCCTGCGCCAGGGGCAGGGACGTCGCAATgg < 2:195471/145‑1 (MQ=255) ccccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCa < 7:348849/133‑1 (MQ=255) ccccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCa > 8:348849/1‑133 (MQ=255) ccccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATggc > 5:75317/1‑148 (MQ=255) ccccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATgg < 3:273296/148‑1 (MQ=255) cccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTc < 8:116571/74‑1 (MQ=255) cccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTc > 7:116571/1‑74 (MQ=255) cccccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCCCCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATGGGt > 3:224114/1‑149 (MQ=255) cccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATGGGTCt > 8:341805/1‑149 (MQ=255) ccACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATGGGTCtt > 4:30497/1‑149 (MQ=255) | GATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGC‑CTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCAGGCTTTTCAAGTTTTGAGAAGACAGTTGCCCCCCACAGGGGGGCACGGATGCCT‑AGACCGCTATGCCCTGTTCGGCCAGGAATGTGACAAAGGCATCTTCGTCCAGCACCTTCACACCCAACTCGGCCGCCTTGGCCAGCTTCGAGCCTGCCCCAGGCCCAGCCACCACGCAATGGGTCTT > NC_002947/4858556‑4858847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |