| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,944,743 | A→G | 9.8% | intergenic (+103/+695) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,944,743 | 0 | A | G | 9.8% | 275.6 / 16.7 | 102 | intergenic (+103/+695) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Reads supporting (aligned to +/- strand): ref base A (46/46); new base G (6/4); total (52/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.41e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
TGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGCACCACGA > NC_002947/4944597‑4944891 | tGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAACGCCGCTCAAACg > 5:265159/1‑149 (MQ=255) cTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCTATTGAGATTAAGCGCCGCTCAAACGGCGC‑t > 6:136984/1‑149 (MQ=255) cTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑t > 2:69103/1‑149 (MQ=255) cTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑t > 8:249150/1‑149 (MQ=255) cTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑t < 1:79009/149‑1 (MQ=255) ttATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAGCAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑t > 2:251879/1‑148 (MQ=255) ttATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑Tc > 5:41405/1‑149 (MQ=255) tAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑ttaat < 7:173397/146‑5 (MQ=255) tAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑ttaat > 8:173397/1‑142 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑TTAATCt < 6:114282/147‑1 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATc < 6:91882/146‑1 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCtt > 4:169398/1‑148 (MQ=255) aacaacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCtt > 5:364559/1‑147 (MQ=255) aacaacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAACGCCGCTCAAACGGCGC‑TCGATCTTGa < 6:265159/149‑1 (MQ=255) acaacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAg < 3:751/149‑1 (MQ=255) caacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAg < 1:170432/148‑1 (MQ=255) caacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAg > 2:170432/1‑148 (MQ=255) cTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGa < 1:240347/144‑1 (MQ=255) cTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGa > 2:240347/1‑144 (MQ=255) ttGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATc > 1:281650/1‑149 (MQ=255) ttGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATc < 3:169398/149‑1 (MQ=255) gATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCa < 4:204047/149‑1 (MQ=255) tCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑ttaatc < 5:283728/134‑6 (MQ=255) tCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGTTTGAGCGGCGC‑ttaatc > 6:283728/1‑129 (MQ=255) tAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAAc > 8:363862/1‑149 (MQ=255) cAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGt < 3:100894/148‑1 (MQ=255) aaTACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTc > 7:276902/1‑148 (MQ=255) aaTACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGAGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGta > 1:159461/1‑147 (MQ=255) tgctgACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGaa > 7:143839/1‑148 (MQ=255) ctgACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATc > 2:277033/1‑129 (MQ=255) ctgACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATc < 1:277033/129‑1 (MQ=255) cagACCGAACAACCAGGATAATTCGTACCATCAGGCTTTTGGATGTCGTTGTTGTTTTTCGGATGGT‑AATTTATTGATCACGCATTTGAGATTAAGCGCCGCTCTAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACt < 4:301254/147‑1 (MQ=255) tgACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACgg < 6:1159/109‑1 (MQ=255) ccGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTc < 8:227204/148‑1 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa < 6:364559/149‑1 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa < 8:143839/149‑1 (MQ=255) gAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCtt > 3:286057/1‑115 (MQ=255) gAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCtt < 4:286057/115‑1 (MQ=255) aacaaGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCTATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc < 5:136984/149‑1 (MQ=255) acaaGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTGAATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGt > 1:318525/1‑148 (MQ=255) caaGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGCATCGATCTTGAGCAATCCCAGAAACGGTCa < 1:238909/131‑1 (MQ=255) caaGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCa > 2:238909/1‑130 (MQ=255) gTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc < 1:376811/144‑1 (MQ=255) tataATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc > 8:240166/1‑143 (MQ=255) tataATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc < 7:240166/143‑1 (MQ=255) tataATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCAcgcc > 3:370180/1‑148 (MQ=255) aTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACg < 5:129279/89‑1 (MQ=255) aTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACg > 6:129279/1‑89 (MQ=255) aTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACtt < 5:180371/130‑1 (MQ=255) aTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACtt > 6:180371/1‑130 (MQ=255) ccATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg < 4:191843/149‑1 (MQ=255) ccATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggc < 1:69103/148‑1 (MQ=255) cATCAGGCTATTGGATGTCGTTTGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg > 1:40948/1‑148 (MQ=255) cATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg > 1:179909/1‑148 (MQ=255) aTCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg < 8:116341/147‑1 (MQ=255) aTCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg > 7:116341/1‑147 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATc < 7:363862/149‑1 (MQ=255) ggCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg < 4:370180/149‑1 (MQ=255) gCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTc < 6:275646/118‑1 (MQ=255) gCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg < 6:215642/142‑1 (MQ=255) gCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcg > 5:215642/1‑142 (MQ=255) gCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCACAGAAACGGTCAAGAAACTTTc > 5:275646/1‑118 (MQ=255) ttGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa < 5:407302/116‑1 (MQ=255) ttGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa > 6:407302/1‑116 (MQ=255) cGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATgg > 3:156120/1‑149 (MQ=255) gtgtTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACt > 2:243121/1‑105 (MQ=255) gtgtTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACt < 1:243121/105‑1 (MQ=255) gtgtTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCgg < 2:281650/148‑1 (MQ=255) gATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCa > 7:380906/1‑148 (MQ=255) ttgT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCaaa < 8:276902/146‑1 (MQ=255) gT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTc < 7:233412/149‑1 (MQ=255) gT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTc > 8:233412/1‑149 (MQ=255) aaTTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTc > 7:219797/1‑147 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg > 4:358877/1‑114 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg < 3:358877/114‑1 (MQ=255) tttATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGc < 7:280812/149‑1 (MQ=255) tATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCgg > 7:200256/1‑149 (MQ=255) tCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGgcgc > 6:191648/1‑147 (MQ=255) cACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAg > 7:114042/1‑149 (MQ=255) cACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAg > 8:156911/1‑149 (MQ=255) ccAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCg < 2:40948/149‑1 (MQ=255) aaTTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGta < 4:156120/149‑1 (MQ=255) aaTTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGta < 8:114042/149‑1 (MQ=255) gagaTTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAg < 1:389471/130‑1 (MQ=255) gagaTTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAg > 2:389471/1‑130 (MQ=255) gagaTTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATac < 2:318525/148‑1 (MQ=255) aTTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACttt > 4:94464/1‑61 (MQ=255) aTTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACttt < 3:94464/61‑1 (MQ=255) ttAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGt > 2:209894/1‑49 (MQ=255) ttAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGt < 1:209894/49‑1 (MQ=255) ttAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGc > 5:249877/1‑127 (MQ=255) ttAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGc < 6:249877/127‑1 (MQ=255) tAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc > 3:128672/1‑149 (MQ=255) aaGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc < 7:378345/148‑1 (MQ=255) aGCGCCGTTTGAGCGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCaaa < 4:200821/117‑1 (MQ=255) aGCGCCGTTTGAGCGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCaaa > 3:200821/1‑117 (MQ=255) aGCGCCGTTTGAGCGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc > 4:166866/1‑147 (MQ=255) cTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGcac > 5:246179/1‑149 (MQ=255) aCGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGCACCACGa > 2:213236/1‑149 (MQ=255) aCGGCGC‑TCGATCTTGAGCAATCACAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAAACGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCCGGCGCAAGGCGTATACACAGACAAGCAGCACCACGa > 3:308869/1‑149 (MQ=255) | TGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGT‑AATTTATTGATCACCCAATTGAGATTAAGCGCCGCTCAAACGGCGC‑TCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGCACCACGA > NC_002947/4944597‑4944891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |