Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,052,263 | T→C | 6.5% | N84S (AAT→AGT) | PP_4452 ← | NAD/NADP octopine/nopaline dehydrogenase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,052,263 | 0 | T | C | 6.5% | 175.5 / 2.4 | 61 | N84S (AAT→AGT) | PP_4452 | NAD/NADP octopine/nopaline dehydrogenase family protein |
Reads supporting (aligned to +/- strand): ref base T (30/27); new base C (2/2); total (32/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 |
AAACTGGCGACGACAAGATCTACCCCCAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGATCCGA > NC_002947/5052119‑5052399 | aaaCTGGCGACGACAAGATCTACCCCCAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTcac < 5:307652/149‑1 (MQ=255) gacAAGATCTACCCCCAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTGAATGCGCACCGACAGGCaattgat < 8:217920/149‑6 (MQ=255) gacAAGATCTACCCCCAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAg > 6:337996/1‑145 (MQ=255) cccccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTAc < 3:354727/145‑1 (MQ=255) cccccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCAc < 8:36474/148‑1 (MQ=255) cccccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCAc < 3:149126/148‑1 (MQ=255) cccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCGATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGt > 8:55479/1‑148 (MQ=255) ccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGt > 3:182222/1‑147 (MQ=255) ccAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGt > 6:406256/1‑147 (MQ=255) cAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAg > 4:397802/1‑149 (MQ=255) cgcgcTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAAcc > 8:213096/1‑149 (MQ=255) gcTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCgtg < 8:231541/149‑1 (MQ=255) cTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCgtgt < 4:251127/149‑1 (MQ=255) ccGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTcc > 6:258421/1‑148 (MQ=255) cGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCt > 7:83760/1‑148 (MQ=255) cGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAAACGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCt > 8:82252/1‑148 (MQ=255) gATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAAt > 2:163555/1‑115 (MQ=255) gATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCgt > 2:168973/1‑139 (MQ=255) gATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCgt < 1:163555/139‑1 (MQ=255) gATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCgt < 1:168973/139‑1 (MQ=255) aGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCGATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTAtt < 7:55479/149‑1 (MQ=255) gcCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGAc < 8:83760/149‑1 (MQ=255) gACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGActc > 5:32008/1‑148 (MQ=255) aCAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTa > 8:34060/1‑149 (MQ=255) ccATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCt < 5:406256/148‑1 (MQ=255) aaCTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGAGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACtt > 5:85900/1‑149 (MQ=255) ttACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTGTCAATGCTCACACTTccc > 7:119108/1‑149 (MQ=255) ttACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTca < 6:301632/141‑1 (MQ=255) ttACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTccc < 5:258421/149‑1 (MQ=255) ttACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGAGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTca > 5:301632/1‑141 (MQ=255) cGATACCCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCACTTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTc < 8:188017/148‑1 (MQ=255) cGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTc < 3:397802/148‑1 (MQ=255) cGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCg < 7:34060/149‑1 (MQ=255) aaCCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCAAAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAaca > 5:291189/1‑149 (MQ=255) aCCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAacac < 5:337996/149‑1 (MQ=255) ccGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCATCAGCGTTATTGACTCTATCAATGCTCACACTTCCCACGAacaca > 3:379959/1‑149 (MQ=255) cttCTGGCCGCTTCTCAAGCTTGGTAGCGCAGCATGAATTGCCTGTCGTTGCTCATTCACAGGCAAGCAGATAATTACCACGTCAGCAGCTGAAACCGTGTCCTCAGCGTTATTGAATCTATCAATGCTCACACTTCCCTCGAacacac < 7:197721/147‑1 (MQ=255) cagCTTCTCAAGCTGGGGAGCGCAGCATCAATTGCCGGTCGGTGCCCATTCACAGCCAAGCAGATAATTACCACGTCAGGCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGc < 8:360860/147‑1 (MQ=255) gCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCAt < 7:82252/149‑1 (MQ=255) tcAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGa > 2:276348/1‑102 (MQ=255) tcAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGa < 1:276348/102‑1 (MQ=255) cAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGa > 5:163000/1‑101 (MQ=255) cAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGa < 6:163000/101‑1 (MQ=255) aaGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGaa < 5:105414/128‑1 (MQ=255) aaGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGAGTTATTGACTCTATCAATGCTCACACTTCCCTCGaa > 6:105414/1‑128 (MQ=255) ggAGCGCAGCATCAATTGCCTGTCGGTGCGCATTAACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAgcgc > 6:182255/1‑149 (MQ=255) tCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAgg > 5:149577/1‑149 (MQ=255) cAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCAt > 6:357656/1‑123 (MQ=255) cAATTGCCTGTCGGTCCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCAt < 5:357656/123‑1 (MQ=255) aaTTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCt > 8:142261/1‑149 (MQ=255) aaTTGCCTGTAGGTTCTCATTCACAGGAAAGGAGATAATTACCAGGTCAGCCGCTGAAACCGTGTCCTCAGCTTTATTGACTCTATCAATGCTCACACTTCCCTAGAACACACCCGTTGAATGTAACTTGAAGCGCCCCAACGAAGGc < 4:379959/148‑1 (MQ=255) cttGCCTGTGAATGCGCACCGACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAgcgc > 2:309245/2‑135 (MQ=255) cttGCCTGTGAATGCGCACCGACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAgcgc < 1:309245/134‑1 (MQ=255) aTTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCt > 4:371931/1‑148 (MQ=255) ttGCCTGTGAATGCGCACCGACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGa > 8:263389/1‑149 (MQ=255) ttGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTg > 8:166069/1‑148 (MQ=255) ccTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGATcc > 3:273270/1‑149 (MQ=255) tGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACtt > 8:316789/1‑122 (MQ=255) tGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACtt < 7:316789/122‑1 (MQ=255) tGTCGGTGCGCATTCACAGGCAAGCAGATAATTACAACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGATCCGa > 1:60075/1‑149 (MQ=255) tCGGTTCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTGTCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGATCCGa < 8:119108/147‑1 (MQ=255) | AAACTGGCGACGACAAGATCTACCCCCAGGTTCCTCGCGCGCTCCCGAAGATAAAGCGCCGACAACGAGCCCATTGAACTTACGATAACCGTCTGGCCGCTTCTCAAGCTTGGGAGCGCAGCATCAATTGCCTGTCGGTGCGCATTCACAGGCAAGCAGATAATTACCACGTCAGCCGCTGAAACCGTGTCCTCAGCGTTATTGACTCTATCAATGCTCACACTTCCCTCGAACACACCCGTTGCATGTAACTTGAAGCGCCCCAACGAAGGCTGATCCGA > NC_002947/5052119‑5052399 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |