| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,268,951 | T→A | 9.6% | intergenic (+19/+17) | PP_4643 → / ← radA | xanthine/uracil permease family protein/DNA repair enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,268,951 | 0 | T | A | 9.6% | 238.8 / 13.2 | 83 | intergenic (+19/+17) | PP_4643/radA | xanthine/uracil permease family protein/DNA repair enzyme |
| Reads supporting (aligned to +/- strand): ref base T (42/33); new base A (3/5); total (45/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01 | |||||||||||
GCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTGGCCGCTTCCTT > NC_002947/5268809‑5269099 | gCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTgctcg > 6:132999/1‑149 (MQ=255) tGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTgctcgctc > 4:79454/1‑149 (MQ=255) gATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTcc > 8:145366/1‑149 (MQ=255) tGGTGACTACTTCAAGGATGGCAAGCTGTGCGATGCCGAGGGTAACGAAGGGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCTTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCt < 3:307468/148‑1 (MQ=255) gtgACTACTTAAAGGAGGGCAATCTGTTCTATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCAAGCTCGCTCCTGc < 2:401322/146‑1 (MQ=255) gggACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCAAGCTCGCTCCTGc < 2:394919/148‑1 (MQ=255) gACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACg > 3:394044/1‑149 (MQ=255) atctctTCAAGGTTGGCAAGCTGTTCGTTGCCTTGGGTAACGAAGTGCCTTTGCTGGAACTGGACGAGCACGGAAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTTAGGGGTTGCAGGA‑GCGAGCTTGCTCGCTCGTGCACGc < 8:203625/145‑1 (MQ=255) ctTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTTGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTAtt < 7:88920/149‑1 (MQ=255) ctTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTAtt > 2:262228/1‑149 (MQ=255) ctTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTAtt < 1:53133/149‑1 (MQ=255) ttCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTTCAGGA‑GCGAGCAAGCTCGCTcc < 7:258623/137‑1 (MQ=255) ttCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCACCTGCACGc > 7:203625/1‑144 (MQ=255) ttCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCAAGCTCGCTcc > 8:258623/1‑137 (MQ=255) cAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCCCGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCg < 5:132999/148‑1 (MQ=255) cAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCg > 4:104265/1‑148 (MQ=255) ggATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAAc > 8:1552/1‑148 (MQ=255) ggATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACa < 3:368074/149‑1 (MQ=255) aTGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAAt < 7:1552/149‑1 (MQ=255) aTGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAAt > 3:160178/1‑149 (MQ=255) ttgCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAAt < 4:160178/146‑1 (MQ=255) ggCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCAGTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATg > 1:336224/1‑148 (MQ=255) cAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCAt > 7:152680/1‑149 (MQ=255) aaGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTAtt < 7:345279/136‑1 (MQ=255) aaGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTAtt > 8:345279/1‑136 (MQ=255) aaGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGACCACTGCAATGAAACGGTCATGC‑GCACGTCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCTCTCCTGCACGATATTCGAACAATGCATc < 1:293533/149‑1 (MQ=255) gCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATc > 1:161021/1‑147 (MQ=255) tGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCAAGCTCGCTcc > 8:212110/1‑121 (MQ=255) tGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCAAGCTCGCTcc < 7:212110/121‑1 (MQ=255) gATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCt < 7:145366/148‑1 (MQ=255) ccGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTc < 2:287835/148‑1 (MQ=255) ccGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTc > 1:259840/1‑148 (MQ=255) cGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTgcgggg > 3:260282/1‑144 (MQ=255) cGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTc > 5:115521/1‑147 (MQ=255) gAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAg > 8:189209/1‑149 (MQ=255) aGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGc > 3:369239/1‑149 (MQ=255) gTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCgg < 1:262228/149‑1 (MQ=255) gTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCgg < 3:79454/149‑1 (MQ=255) gTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCgg < 4:369239/149‑1 (MQ=255) aaCGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAATGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGtt > 8:145938/1‑139 (MQ=255) aaCGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAATGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGtt < 7:145938/139‑1 (MQ=255) aCGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGt > 5:279059/1‑148 (MQ=255) cGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTaa < 8:152680/149‑1 (MQ=255) aTGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCAc < 3:104265/149‑1 (MQ=255) tGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAATAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAAt < 3:124026/142‑1 (MQ=255) tGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAAGAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAAt > 4:124026/1‑142 (MQ=255) gACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCg > 2:373805/1‑148 (MQ=255) aCGAGCACGGCAATGAAACGGTCAGGCGGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCTAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACg > 1:232827/1‑129 (MQ=255) aCGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACg < 2:232827/128‑1 (MQ=255) gAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAgg < 4:394044/149‑1 (MQ=255) cACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGGCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGgcg > 1:116789/1‑149 (MQ=255) cACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCAt < 1:24106/97‑1 (MQ=255) cACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCAt > 2:24106/1‑97 (MQ=255) aCGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCa < 3:194146/95‑1 (MQ=255) aCGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCa > 4:194146/1‑95 (MQ=255) cGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGctt > 7:52964/1‑149 (MQ=255) ggCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGcttc > 2:337825/1‑149 (MQ=255) cAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAACGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGcttctt > 1:91188/1‑149 (MQ=255) tGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCg < 6:115521/149‑1 (MQ=255) tGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCg > 3:302302/1‑149 (MQ=255) tGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCg < 6:279059/149‑1 (MQ=255) aaaCGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCgg < 7:189209/148‑1 (MQ=255) aaaCGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGgc < 3:382108/149‑1 (MQ=255) aCGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGcc < 2:4983/103‑1 (MQ=255) aCGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGcc > 1:4983/1‑103 (MQ=255) tCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTg > 1:124087/1‑149 (MQ=255) tCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTg > 6:93126/1‑149 (MQ=255) aGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCTTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGcc > 7:74337/1‑149 (MQ=255) ggC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGccc < 2:336224/149‑1 (MQ=255) cACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTgg < 1:373805/149‑1 (MQ=255) aCGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTggg > 8:316829/1‑149 (MQ=255) aCGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTg < 4:25151/147‑1 (MQ=255) aCGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGATTCTTTCGGCGCATTGCCCTTgg > 3:25151/1‑148 (MQ=255) tGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTg > 1:359338/1‑147 (MQ=255) tGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTg > 8:218863/1‑147 (MQ=255) gggTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCg > 1:190679/1‑149 (MQ=255) gggTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCg < 2:190679/149‑1 (MQ=255) gTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCtt < 3:214025/140‑1 (MQ=255) gTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCtt > 4:214025/1‑140 (MQ=255) aGGA‑GCGAGCAAGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTg < 6:120474/148‑1 (MQ=255) aGGA‑GCGAGCAAGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTg > 5:120474/1‑148 (MQ=255) ga‑gcgagcTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTGGcc > 3:212107/1‑149 (MQ=255) agcTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAGCCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTGGCCGcttc > 2:223111/1‑149 (MQ=255) ttGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTGGCCGcttcctt > 6:79661/1‑149 (MQ=255) | GCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGC‑GCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGA‑GCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACCCCGCAGGCGCTTCTTTCGGCGCATTGCCCTTGGGCACGATGGCACGCTTGAAGCCGTGCTTGGCCGCTTCCTT > NC_002947/5268809‑5269099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |