| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,276,840 | G→A | 5.4% | intergenic (‑144/‑200) | cioA ← / → PP_4652 | cyanide insensitive ubiquinol oxidase subunit I/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,276,840 | 0 | G | A | 5.4% | 287.9 / 3.2 | 92 | intergenic (‑144/‑200) | cioA/PP_4652 | cyanide insensitive ubiquinol oxidase subunit I/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (40/47); new base A (3/2); total (43/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 | |||||||||||
CATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTAC > NC_002947/5276694‑5276986 | cATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGAt < 1:33588/149‑1 (MQ=255)cATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGAt < 3:221318/149‑1 (MQ=255) aTGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGAtt < 8:58568/149‑1 (MQ=255) cTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAcc > 3:283337/1‑147 (MQ=255) cTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTATTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc < 8:326531/148‑1 (MQ=255) cTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCACCACTGGGTCGAGTACGGCCTGTTGGAATTGTTCTGTTCGATCGCAGGGATTACGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc > 5:284872/1‑148 (MQ=255) tctTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATc > 6:371824/1‑148 (MQ=255) tctTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATc > 2:354975/1‑148 (MQ=255) tctTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATc > 6:134086/1‑148 (MQ=255) ttCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaat > 6:320715/1‑149 (MQ=255) tCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCa < 8:215056/141‑1 (MQ=255) tCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCa > 7:215056/1‑141 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc < 3:169555/139‑1 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc > 4:169555/1‑139 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaat < 1:354975/147‑1 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaat < 7:265974/147‑1 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaa < 1:18444/146‑1 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACAATT‑GACCCAG‑ATCaat < 8:154652/147‑1 (MQ=255) gATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc > 4:406306/1‑137 (MQ=255) gATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GAccc < 3:406306/137‑1 (MQ=255) aTAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaatgaat > 7:126720/1‑148 (MQ=255) aTAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCaatgaat < 8:126720/148‑1 (MQ=255) tAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGGTCAATC‑GTTCCAG‑ATCaatgaattg > 8:86478/1‑147 (MQ=38) aTCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCCCTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCt < 5:104944/148‑1 (MQ=255) aTCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCt < 4:283337/148‑1 (MQ=255) tCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAg > 2:158293/1‑149 (MQ=255) tCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAg > 3:101893/1‑149 (MQ=255) cGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGATAgg > 6:120451/1‑148 (MQ=255) ggCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGGTCAATC‑GTTCCAG‑ATCaatg < 2:380081/138‑1 (MQ=39) ggCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGGTCAATC‑GTTCCAG‑ATCaatg > 1:380081/1‑138 (MQ=39) ggCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGaa < 6:302459/149‑1 (MQ=255) cGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAg > 1:98939/1‑149 (MQ=255) gCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAGCATCAATGAATGCTAGGAAG‑‑CATAGTc < 1:4295/149‑1 (MQ=255) cTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTAGAGTTCGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCGAGACGGCCAATTCATTGATCT‑GGAACGATTAGACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATTGTcc < 1:262726/149‑1 (MQ=255) gtgGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCg < 5:134086/147‑1 (MQ=255) gCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATgg > 2:217683/1‑149 (MQ=255) gCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATg < 8:108900/148‑1 (MQ=255) ccccAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGc > 8:58719/1‑149 (MQ=255) ccccAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATAAATGAATGATAGGAAG‑‑CATAGTCACGAATGGc > 4:303617/1‑149 (MQ=255) cccAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATgg > 5:93317/1‑147 (MQ=255) cccAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATgg < 6:93317/147‑1 (MQ=255) cccAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGcc < 6:56516/149‑1 (MQ=255) cccACTGGCCCCTATGGGTCGAGTACGTCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGTCCAATTCATTGATCT‑GGAACGTTT‑GAACCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTGGCGAATGGCCCGGTGGGc < 5:108078/149‑1 (MQ=255) cccACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGc > 3:312666/1‑149 (MQ=255) ccACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGcc < 2:127278/149‑1 (MQ=255) ccACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCACGGTgggac > 3:320805/1‑147 (MQ=255) cccccACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGtgtg < 2:98939/148‑1 (MQ=255) ccACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGcc < 2:176390/140‑1 (MQ=255) ccACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGcc > 1:176390/1‑140 (MQ=255) aCTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGAt > 2:117361/1‑149 (MQ=255) ggTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGcc > 5:186987/1‑149 (MQ=255) cGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCgg > 3:243272/1‑125 (MQ=255) cGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCgg < 4:243272/125‑1 (MQ=255) gAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGt < 5:281790/149‑1 (MQ=255) tACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGAc < 1:217683/149‑1 (MQ=255) gCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGt < 1:158293/149‑1 (MQ=255) gtgtTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTg > 2:228527/1‑149 (MQ=255) tgtTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCCTGTGGTGGATTGCCGCGTGACCTGTTGc < 1:228527/149‑1 (MQ=255) ttGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGcc < 5:320715/148‑1 (MQ=255) aTTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGaa < 1:404981/99‑1 (MQ=255) aTTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGaa > 2:404981/1‑99 (MQ=255) ttGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAGACCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCAcc < 1:117361/149‑1 (MQ=255) ttctgttcGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGcc < 7:13259/139‑1 (MQ=255) ttctgttcGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCctct < 4:312666/148‑1 (MQ=255) ttctgttcGATCGCAGGGATTCCGGCCAGACGGCCAATTAATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGcc > 8:13259/1‑139 (MQ=255) tgttcGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCCCCCTCTTTGa > 7:282687/1‑149 (MQ=255) ttcGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTg < 6:284872/146‑1 (MQ=255) ttcGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGAt < 2:127320/148‑1 (MQ=255) tCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAg > 1:344014/1‑149 (MQ=255) cAGGGATTCCGGCCAGACGGCCAATTCATTGATCTGGGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg > 1:73620/1‑149 (MQ=255) cAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg > 6:179606/1‑148 (MQ=255) cAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg < 2:73620/148‑1 (MQ=255) ggATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGt > 3:367037/1‑144 (MQ=255) ggATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGt < 4:367037/144‑1 (MQ=255) ggATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACACAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGTTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCGTCACCCTCTTTGATTAGCAGTGGaa > 4:366297/1‑148 (MQ=255) ccGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGCGGAAAAGTGc > 4:289286/1‑149 (MQ=255) gCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGa < 7:58719/149‑1 (MQ=255) aGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCt > 8:82282/1‑149 (MQ=255) aGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCt < 7:82282/149‑1 (MQ=255) cGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTATGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAg < 5:179606/149‑1 (MQ=255) cAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCaaa < 2:344014/149‑1 (MQ=255) aTTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCCCCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTaa > 5:52916/1‑149 (MQ=255) ttGATCT‑GGGTCAATC‑GTTCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAAc > 7:10998/1‑149 (MQ=255) tCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaa < 5:349172/120‑1 (MQ=255) tCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaa > 6:349172/1‑120 (MQ=255) ggAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGt > 8:80772/1‑149 (MQ=255) gAACGATT‑GACCCAG‑TTCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCtt < 3:303617/146‑1 (MQ=255) gAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCtt < 2:87033/146‑1 (MQ=255) gAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCt < 3:20244/145‑1 (MQ=255) gAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCt > 4:20244/1‑145 (MQ=255) aaCGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGtt > 3:125789/1‑148 (MQ=255) aCGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTAc < 6:186987/149‑1 (MQ=255) | CATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGGTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGGATTCCGGCCAGACGGCCAATTCATTGATCT‑GGAACGATT‑GACCCAG‑ATCAATGAATGCTAGGAAG‑‑CATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTAC > NC_002947/5276694‑5276986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |