Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,539,022	C→A	8.1%	R655L (CGT→CTT)	PP_4872 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,539,022	0	C	A	8.1%	191.0 / 4.3	60	R655L (CGT→CTT)	PP_4872	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (27/28);  new base A (2/3);  total (29/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAAGTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGGCGCGGAAG  >  NC_002947/5538878‑5539165                                                                                                                                                 |                                                                                                                                                tAAGTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCg                                                                                                                                             <  1:361653/149‑1 (MQ=255) tAAGTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCg                                                                                                                                             >  2:237255/1‑149 (MQ=255)    gTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTg                                                                                                                                          >  4:115622/1‑149 (MQ=255)    gTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCGTCTGCACAAGGCGttc                                                                                                                                          <  7:339348/149‑2 (MQ=255)    gTATCGGGCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCAGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTg                                                                                                                                          <  2:356874/149‑1 (MQ=255)                     gTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGAc                                                                                                                           <  5:39426/147‑1 (MQ=255)                        cAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGAtct                                                                                                                      >  7:28813/1‑149 (MQ=255)                         aGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCGTCTGCACAAGGCGttctt                                                                                                                                        <  5:239928/130‑4 (MQ=255)                         aGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCGTCTGCACAAGGCGttctt                                                                                                                                        >  6:239928/1‑127 (MQ=255)                              gATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCAccc                                                                                                                <  8:31044/149‑1 (MQ=255)                                tCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCt                                                                                                              >  1:17144/1‑149 (MQ=255)                                   gTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCg                                                                                                           >  5:419558/1‑149 (MQ=255)                                   gTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCg                                                                                                           >  6:385156/1‑149 (MQ=255)                                       gTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGAtc                                                                                                                       <  2:157215/133‑1 (MQ=255)                                       gTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctct                                                                                                       >  6:210311/1‑149 (MQ=255)                                       gTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctc                                                                                                        <  6:419558/148‑1 (MQ=255)                                       gTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctc                                                                                                        >  6:348259/1‑148 (MQ=255)                                       gTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctc                                                                                                        <  5:348259/148‑1 (MQ=255)                                        tGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCtt                                                                                                      <  2:155663/149‑1 (MQ=255)                                        tGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCtt                                                                                                      <  5:210311/149‑1 (MQ=255)                                             gcccggcccgATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAg                                                                                                  <  3:300033/148‑1 (MQ=255)                                               ccggcccgATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGt                                                                                                >  6:274620/1‑148 (MQ=255)                                                            gTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTa                                                                                                   >  3:252704/1‑132 (MQ=255)                                                            gTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTa                                                                                                   <  4:252704/132‑1 (MQ=255)                                                                 ctcggcCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTc                                                                             <  7:174628/149‑1 (MQ=255)                                                                           aCGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGt                                                                   >  3:270947/1‑149 (MQ=255)                                                                            cGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGt                                                                   <  3:115622/148‑1 (MQ=255)                                                                             gCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAg                                                                    <  4:242588/146‑1 (MQ=255)                                                                             gCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAg                                                                    >  3:242588/1‑146 (MQ=255)                                                                                    cgcTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtgg                                                          >  4:162737/1‑149 (MQ=255)                                                                                          aCGCAGCATCGGCCAGCCCTTCTGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtggccgtgg                                                    >  8:249299/1‑149 (MQ=255)                                                                                           cGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtggccgtggc                                                   >  2:246727/1‑149 (MQ=255)                                                                                             cagcaTCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtggccgtggccg                                                 >  7:90539/1‑149 (MQ=255)                                                                                               gcaTCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAg                                               <  8:90539/149‑1 (MQ=255)                                                                                                caTCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAgg                                              <  5:385156/149‑1 (MQ=255)                                                                                                caTCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAgg                                              <  3:162737/149‑1 (MQ=255)                                                                                                caTCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAgg                                              <  1:237255/149‑1 (MQ=255)                                                                                                     gCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTg                                                                                                     >  1:170101/1‑89 (MQ=255)                                                                                                     gCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTg                                                                                                     <  2:170101/89‑1 (MQ=255)                                                                                                             ttCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACgg                                 >  5:131046/1‑149 (MQ=255)                                                                                                                 ggTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACggg                                >  8:131831/1‑146 (MQ=255)                                                                                                                 ggTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACggg                                >  2:253573/1‑146 (MQ=255)                                                                                                                  gTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTa                              >  4:392430/1‑147 (MQ=255)                                                                                                                  gTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTa                              <  3:392430/147‑1 (MQ=255)                                                                                                                     gTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctc                                                                                                        >  1:57474/1‑70 (MQ=255)                                                                                                                     gTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGctc                                                                                                        <  2:57474/70‑1 (MQ=255)                                                                                                                           gcgcAAGAACGCCTTGTTCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCGACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGt                    <  3:150115/148‑1 (MQ=255)                                                                                                                            cgcAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTAc                  <  5:274620/149‑1 (MQ=255)                                                                                                                               agcaaCGCCGTCTGCACAAGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtggccgtggcct                                                 <  7:154164/112‑2 (MQ=255)                                                                                                                               agcaaCGCCGTCTGCACAAGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAtggccgtggccg                                                 >  8:154164/4‑115 (MQ=255)                                                                                                                                      ccTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGgcg        <  4:270947/149‑1 (MQ=255)                                                                                                                                       cTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTAc                  >  2:106865/1‑138 (MQ=255)                                                                                                                                       cTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGgcgc       <  1:246727/149‑1 (MQ=255)                                                                                                                                       cTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGgcgc       <  2:235786/149‑1 (MQ=255)                                                                                                                                       cTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGgcgc       >  4:265906/1‑149 (MQ=255)                                                                                                                                       cTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCCGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTAc                  <  1:106865/138‑1 (MQ=255)                                                                                                                                        ttGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGGcgcg      >  7:227759/1‑149 (MQ=255)                                                                                                                                            gCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGGCGCGGAAg  >  8:277420/1‑149 (MQ=255)                                                                                                                                               gACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTg                                        >  8:109905/1‑108 (MQ=255)                                                                                                                                               gACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTg                                        <  7:109905/108‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                TAAGTATCGGTCTGCGGCTGGTGCAGCGGGATCAGTTGGTGCTTGCCCGGCCCGATCAGGTCGGCTCGGCCCATACGCTGCAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACATGGCCGTGGCCGAGGCCATTGGCGACGGGTAGAACGCCTGTACCTGGTCGGCGCGGAAG  >  NC_002947/5538878‑5539165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑