| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,657,893 | C→A | 8.7% | intergenic (‑199/‑53) | tktA ← / → sahR | transketolase A/methionine metabolism transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,657,893 | 0 | C | A | 8.7% | 251.5 / 10.3 | 80 | intergenic (‑199/‑53) | tktA/sahR | transketolase A/methionine metabolism transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (37/36); new base A (4/3); total (41/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
ATTTTCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTGC > NC_002947/5657745‑5658039 | aTTTTCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAc > 2:375502/1‑149 (MQ=255) cGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACtttt < 2:56617/148‑1 (MQ=255) gCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACttttt < 2:144058/148‑1 (MQ=255) gCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACttttt > 5:46514/1‑148 (MQ=255) cccACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACttttt < 5:212290/147‑1 (MQ=255) cccACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACttttt > 6:212290/1‑147 (MQ=255) ggggCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAAGTTTTGATATTgg < 1:373637/148‑1 (MQ=255) tcTTGGGGAAAACATTTAAGCGCCTAGCGCCTGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGTGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTTCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGc < 8:203987/148‑1 (MQ=255) cTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGc > 5:412886/1‑148 (MQ=255) gCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAAGTTTCGATATTgg > 7:354042/1‑136 (MQ=255) gCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAAGTTTCGATATTgg < 8:354042/136‑1 (MQ=255) cAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCAt > 4:9439/1‑149 (MQ=255) cAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCAt < 6:46514/149‑1 (MQ=255) aaaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACtttt > 7:179604/1‑125 (MQ=255) aaaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACtttt < 8:179604/125‑1 (MQ=255) aaaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATAACAAAACTTTTTGATATTGGCCTTGCTAGGGCATc > 7:64887/1‑149 (MQ=255) cATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGAt < 1:28594/149‑1 (MQ=255) aTTTAAGCGCCAAGCGCCTGCTTTAAGCCGCAACTGAACAAGCAGAGCGAGACTCGCGGTGCCCCAAAGCGTGTAACATGAGGCTTTCGGCTTGCAGCTCATCGCCAATAACAAAACATATTGATATTGGCCTTGCTAGGGCATCGAta > 7:90011/1‑148 (MQ=255) tttAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGc < 6:412886/149‑1 (MQ=255) tttAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGc < 5:15886/149‑1 (MQ=255) aagcgccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt < 2:218193/148‑1 (MQ=255) aagcgccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTg > 5:66449/1‑149 (MQ=255) gccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTc > 5:167269/1‑147 (MQ=255) gccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑Ta < 8:180968/149‑1 (MQ=255) gccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTgc‑c > 5:26090/1‑149 (MQ=255) tttAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCa > 2:263812/1‑149 (MQ=255) tAAGCAGCAACTGAAGAAGCAGAGCGCGACTCGGTGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAATCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCa < 4:223086/147‑1 (MQ=255) ccGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTc > 8:361852/1‑128 (MQ=255) ccGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTc < 7:361852/128‑1 (MQ=255) ccGCAACTGAAGAAGCAGACCGCGACTCGGGCCGACCCAAAGCGAGTAACTTGAGCCTTTCGGCTTGCAGCTCATCGCCAAAATCAAAACTTTTAGAAAATTGCCTACCAAGGGAATCCATGCCTGTC‑TAGACTGC‑CC‑‑CCCCATGCAt > 4:285654/1‑148 (MQ=255) cTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCtgcgtg > 4:144232/1‑149 (MQ=255) tGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCtgcgtgc < 6:66449/149‑1 (MQ=255) aagaagCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCtgcgtgc < 1:263812/147‑1 (MQ=255) gaagCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCaa < 6:167269/149‑1 (MQ=255) gagCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATc > 4:408776/1‑149 (MQ=255) gagCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTATTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAAACTGCGTTCGCAATCGAt > 8:320338/1‑148 (MQ=255) cgcgACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATcccc > 2:338362/1‑149 (MQ=255) cgACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGa < 8:149947/149‑1 (MQ=255) cgACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGa < 3:220480/149‑1 (MQ=255) aCTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAg < 4:197062/148‑1 (MQ=255) aCTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAg > 3:197062/1‑148 (MQ=255) cTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGc > 3:144731/1‑148 (MQ=255) ggggCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGCTGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAAcg > 5:207325/1‑149 (MQ=255) ggCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAg > 4:373335/1‑142 (MQ=255) ggCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAg < 3:373335/142‑1 (MQ=255) gcCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGaaa < 3:144232/149‑1 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATg < 6:265587/110‑1 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCt > 1:246659/1‑115 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCt < 2:246659/115‑1 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTGTTTGATATTTGCCTTTCTATGGCCTAGATTCCTTTC‑TAGCCTTG‑CC‑‑CCCCATGAATATTCGTTCGCAATAGATACCCCAGCAACGCGAAACa > 1:318307/1‑149 (MQ=255) tgtAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGcc > 7:247166/1‑149 (MQ=255) tAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCt < 4:144731/149‑1 (MQ=255) cTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgtg < 3:408776/149‑1 (MQ=255) gAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCa > 4:233635/1‑148 (MQ=255) aGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCATCCGGGGCACGGACTCGATNAAACTGCGTGCGCAATAGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgtg > 1:337946/1‑149 (MQ=255) cGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGt < 6:26090/148‑1 (MQ=255) cAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgc < 3:233635/149‑1 (MQ=255) gCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgcgc > 3:327264/1‑149 (MQ=255) cTCATCTCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgcgct < 4:2070/149‑1 (MQ=255) aTCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgcgctgcg > 3:156449/1‑149 (MQ=255) ggCCAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGcc > 3:171007/2‑149 (MQ=255) gCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgt < 6:250215/121‑1 (MQ=255) gCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgt > 5:250215/1‑121 (MQ=255) gCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCt < 1:338362/149‑1 (MQ=255) ccAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCt > 2:13350/1‑148 (MQ=255) ccAATATCAAAAAGTTTTGATATTGGCCATGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCAGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGc > 1:232788/1‑127 (MQ=255) acAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATTCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGc < 2:232788/126‑1 (MQ=255) aaTATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGcc < 6:309325/145‑1 (MQ=255) aaTATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGcc > 5:309325/1‑145 (MQ=255) atatCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTgg < 2:243103/108‑1 (MQ=255) atatCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTgg > 1:243103/1‑108 (MQ=255) tatCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTg > 2:30345/1‑145 (MQ=255) tatCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTg < 1:30345/145‑1 (MQ=255) tCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTa > 2:216384/1‑149 (MQ=255) cAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTg < 2:56949/125‑1 (MQ=255) cAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTg > 1:56949/1‑125 (MQ=255) aaaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGTACGTAtt < 8:64887/149‑1 (MQ=255) aaaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTAtt > 6:346351/1‑149 (MQ=255) aaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTg > 2:361333/1‑149 (MQ=255) aaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGACTGAACGTATTg > 7:182214/1‑149 (MQ=255) aaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTgc < 1:216384/149‑1 (MQ=255) | ATTTTCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTC‑TAGACTGC‑CG‑‑CCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTGC > NC_002947/5657745‑5658039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |