| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,104,053 | T→A | 5.8% | intergenic (+31/‑83) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,104,053 | 0 | T | A | 5.8% | 330.7 / 5.7 | 103 | intergenic (+31/‑83) | PP_5353/PP_5354 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (50/47); new base A (2/4); total (52/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
GAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTCC > NC_002947/6103911‑6104200 | gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCg > 3:263172/1‑149 (MQ=255)gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCg > 2:72053/1‑149 (MQ=255) aagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCgg > 7:318864/1‑149 (MQ=255) agaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCggg > 6:307539/1‑149 (MQ=255) gaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTACTAAACACAGA‑ACCCCGGGCTTGCCCgggg < 8:37814/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGttt > 2:216651/1‑149 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGttt > 4:399647/1‑149 (MQ=255) tCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGCCGAGAACCAGCCTTCGATGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGAGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGtatt > 4:375128/1‑149 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGttttt < 6:33515/148‑1 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCAAGCCCGGGGttctgt < 1:348584/149‑5 (MQ=255) cgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgc > 8:336796/1‑149 (MQ=255) gcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgct < 8:100654/149‑1 (MQ=255) gcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgct > 5:420626/1‑149 (MQ=255) gcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAAA‑ACCCCGGGCAAGCCCGGGGttctgtgt < 6:327843/149‑7 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑t < 6:420626/148‑1 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt < 5:2174/147‑1 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGACACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑t < 3:334434/148‑1 (MQ=255) ggCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGt < 2:21646/149‑1 (MQ=255) gCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTg < 3:399647/149‑1 (MQ=255) cGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTgg > 3:162548/1‑149 (MQ=255) cGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTgg < 1:216651/149‑1 (MQ=255) gAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTggg < 2:104470/149‑1 (MQ=255) gAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGCGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTggg < 5:426271/149‑1 (MQ=255) tgtTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctac > 2:1875/1‑149 (MQ=255) ttCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctacta < 1:68021/149‑1 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑tg < 7:135162/130‑1 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑tg > 8:135162/1‑130 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctacta > 7:19883/1‑146 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctacta < 8:19883/146‑1 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg < 4:162548/148‑1 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg < 1:209024/148‑1 (MQ=255) aaGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATaa < 1:1875/149‑1 (MQ=255) tGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGgcg > 4:299350/1‑149 (MQ=255) gCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGgcg > 3:352879/1‑147 (MQ=255) gCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCa < 1:72053/149‑1 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCggg > 1:317094/1‑102 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCggg < 2:317094/102‑1 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctacta > 4:97038/1‑131 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGctacta < 3:97038/131‑1 (MQ=255) ggTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑t < 3:295743/112‑1 (MQ=255) ggTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgcttt‑t > 4:295743/1‑112 (MQ=255) gTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGt > 3:287167/1‑149 (MQ=255) ttCGAGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGACCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGtttt > 4:61933/1‑146 (MQ=255) gcgcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATc > 1:215415/1‑149 (MQ=255) gcgcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGGGGGCTACTAGGGTATAAGGCGCAGCGTGGTCATc > 8:352055/1‑149 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGACACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCaaa < 1:67121/112‑1 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCaaa > 2:67121/1‑111 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTa < 4:263172/149‑1 (MQ=255) cccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAg < 7:336796/149‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgc > 1:406165/1‑99 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTttttgc < 2:406165/99‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg < 1:229356/122‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg > 2:229356/1‑122 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAgg > 1:110965/1‑149 (MQ=255) aGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGG‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCa < 1:357211/149‑1 (MQ=255) gCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCaga < 6:230806/149‑1 (MQ=255) aCCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGt < 6:43167/149‑1 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTg > 1:55855/1‑148 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTg > 4:302674/1‑148 (MQ=255) aGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGaa > 1:49512/1‑149 (MQ=255) gCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATCAGGCGCAGCGTTGTCATCTAGGTCaga < 1:17809/139‑1 (MQ=255) gCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCaga > 2:17809/1‑139 (MQ=255) ttGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGt > 5:370234/1‑149 (MQ=255) ggTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaag > 5:86914/1‑148 (MQ=255) gCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGt < 6:370234/148‑1 (MQ=255) tCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaac < 3:302674/149‑1 (MQ=255) cGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaa < 2:215415/149‑1 (MQ=255) gTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaac > 3:99845/1‑149 (MQ=255) aaaaCAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTcc < 3:299350/149‑1 (MQ=255) aaaCAGCTAATCGCCGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCg > 3:389969/1‑149 (MQ=255) tAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaa < 7:41660/134‑1 (MQ=255) tAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc > 2:378238/1‑148 (MQ=255) gCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATg < 2:110965/148‑1 (MQ=255) tGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg > 5:80743/1‑66 (MQ=255) tGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg < 6:80743/66‑1 (MQ=255) cTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTAc > 4:144982/1‑149 (MQ=255) tAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa < 4:404792/137‑1 (MQ=255) tAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa > 3:404792/1‑137 (MQ=255) aaaCTCAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa < 5:201550/136‑1 (MQ=255) aaaCACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa > 6:201550/1‑136 (MQ=255) aaaCACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCg > 5:55895/1‑149 (MQ=255) acacAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTTGTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCgg > 1:66520/1‑149 (MQ=255) acacAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGt < 5:307539/149‑1 (MQ=255) acaGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAgg < 2:293804/54‑1 (MQ=255) aaaa‑aCCCCGGGCAAGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGcc > 2:166335/4‑149 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACGGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGccc > 7:119473/1‑149 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc > 8:348613/1‑127 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc < 7:348613/127‑1 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGa < 6:139474/133‑1 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGa > 5:139474/1‑133 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGccc < 4:287167/149‑1 (MQ=255) aGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACAAGGGTATAAGGCGCAGCGTTGACATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGccc > 2:181256/1‑149 (MQ=255) aCCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg < 3:144982/149‑1 (MQ=255) aCCCCGGGCAAGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg < 1:166335/149‑1 (MQ=255) ccccGGGCAAGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGga < 1:178937/96‑1 (MQ=255) ccccGGGCAAGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGga > 2:178937/1‑96 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 3:141069/1‑147 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 8:191476/1‑147 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 6:364359/1‑147 (MQ=255) cTTGACCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTcc < 3:61933/149‑1 (MQ=255) | GAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGA‑ACCCCGGGCTTGCCCGGGGTTTTTGCTTT‑TGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTCC > NC_002947/6103911‑6104200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |