| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 650,238 | C→A | 6.3% | intergenic (‑82/+18) | accB ← / ← aroQ‑I | acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 650,238 | 0 | C | A | 6.3% | 310.4 / 7.8 | 95 | intergenic (‑82/+18) | accB/aroQ‑I | acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (48/41); new base A (3/3); total (51/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 | |||||||||||
TCTCCAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTT > NC_002947/650090‑650386 | tctcCAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATAATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTAACTGAAACGTTTCTCTCGAACCCCGGCCCAc > 1:57087/1‑149 (MQ=255) ctcCAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt > 2:103133/1‑149 (MQ=255) ccAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt > 2:12540/1‑147 (MQ=255) ccAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTACGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt > 6:103354/1‑147 (MQ=255) gTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGc < 6:91365/149‑1 (MQ=255) tcgATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAggg < 7:335878/149‑1 (MQ=255) aTGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGttt < 5:103354/149‑1 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtca < 1:218684/149‑1 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtc < 1:96167/148‑1 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtc > 2:96167/1‑148 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtc < 4:147363/148‑1 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt < 5:208314/132‑1 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt < 5:202478/132‑1 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt > 6:208314/1‑132 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACt > 6:202478/1‑132 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtcat < 1:214841/149‑1 (MQ=255) aGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCTGGCCTAAGTGGGCCGGGGttcga < 8:248274/146‑4 (MQ=255) aGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCTGGCCTAAGTGGGCCGGGGttcga > 7:248274/1‑143 (MQ=255) ttCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTgg > 4:326650/1‑149 (MQ=255) ttCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTgg > 2:318674/1‑149 (MQ=255) cagcagCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCt > 7:81127/1‑149 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGtt < 3:326650/147‑1 (MQ=255) aTCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAgg < 2:143891/121‑1 (MQ=255) aTCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTAAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAgg > 1:143891/1‑121 (MQ=255) tttCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGc > 8:218943/1‑147 (MQ=255) tttCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCa < 1:12540/149‑1 (MQ=255) tttACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTc > 2:222072/1‑147 (MQ=255) aCGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAgcg > 5:418737/1‑149 (MQ=255) ggATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGcgcg < 1:103133/149‑1 (MQ=255) ggATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGcgcg < 6:418737/149‑1 (MQ=255) tCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtcat < 2:294925/105‑1 (MQ=255) tCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTtcat > 1:294925/1‑105 (MQ=255) ccATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAg > 4:209516/1‑90 (MQ=255) ccATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAg < 3:209516/90‑1 (MQ=255) ccATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTc > 3:325917/1‑148 (MQ=255) cATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTc > 7:200036/1‑147 (MQ=255) aTTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAg > 8:112517/1‑149 (MQ=255) atcatcAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGc > 6:189607/1‑148 (MQ=255) tcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGc > 4:103725/1‑149 (MQ=255) tcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGc > 8:204984/1‑149 (MQ=255) caACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGc > 3:151732/1‑148 (MQ=255) caACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGc > 3:63873/1‑148 (MQ=255) aaCTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGa > 6:35419/1‑149 (MQ=255) aCTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCTGGCCTAAGTGGGCCGGGGttcg > 2:174074/1‑86 (MQ=37) aCTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCTGGCCTAAGTGGGCCGGGGttcg < 1:174074/88‑3 (MQ=37) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATaa < 3:103725/147‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATaa < 4:151732/147‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAAcc > 8:207861/1‑149 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAAcc < 3:42326/149‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGATGTGCGTTGG‑CAGCCAGTTGTTACAGCGCGGACTCCAGGGCCAGGCGATAAcc > 3:260781/1‑149 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGATGTGCGTTGG‑CAGCCAGTAGTTCCAGCGCGGACTCAAGGGCCAGGCGATaa > 5:205847/1‑147 (MQ=255) aaGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCt < 3:315753/149‑1 (MQ=255) ttCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGgcg < 7:204984/149‑1 (MQ=255) ggTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGcc > 3:117717/1‑148 (MQ=255) gTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGTCCTCCAGGGCCAGGCGATACCCGCTGgcgac > 8:286541/1‑145 (MQ=255) aGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGACAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGa < 1:318674/149‑1 (MQ=255) ggCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCa < 4:117717/149‑1 (MQ=255) aaaTACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGAt > 7:40756/1‑148 (MQ=255) tACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcc < 8:81127/149‑1 (MQ=255) aaaaaaCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 6:110432/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 1:299804/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 6:160011/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 2:308240/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCTCTAGAACCCCGGCCCACTAAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGTCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATAAcccc > 2:406300/1‑148 (MQ=255) aaCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACgg < 2:299804/149‑1 (MQ=255) aCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGc < 7:218943/149‑1 (MQ=255) aCGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGc < 1:308240/149‑1 (MQ=255) tATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAccc > 2:48799/1‑139 (MQ=255) tATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAccc < 1:48799/139‑1 (MQ=255) cTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATc > 1:374157/1‑149 (MQ=255) tGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGc > 1:196180/1‑111 (MQ=255) tGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGc < 2:196180/111‑1 (MQ=255) tGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 6:260949/1‑149 (MQ=255) gAAACGTTTCTCTTGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 1:103261/1‑148 (MQ=255) gAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACgg < 3:103212/140‑1 (MQ=255) gAAACGTTTCTCTCGAACCCCGGCCCACATAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACgg > 4:103212/1‑140 (MQ=255) aaCGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaa < 2:57087/149‑1 (MQ=255) cGTTTCTCTCGAACCCCTGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaaa < 6:24714/149‑1 (MQ=255) gTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGCTCACCCCTACGGCAACATCGGAAAAg > 1:48325/1‑149 (MQ=255) gTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAg > 2:377774/1‑149 (MQ=255) tttCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGt < 5:260949/149‑1 (MQ=255) tttCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGt < 6:363864/149‑1 (MQ=255) tctcGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAg > 2:144207/1‑147 (MQ=255) tcGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGa < 5:35419/147‑1 (MQ=255) cGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAg > 4:355769/1‑144 (MQ=255) cGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAg < 3:355769/144‑1 (MQ=255) gAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAgt < 6:381168/147‑1 (MQ=255) gAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAgt > 5:381168/1‑147 (MQ=255) gAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAg < 4:325917/146‑1 (MQ=255) aaaCCCTGGCCTAAGTGGGCCGGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaaa > 4:224151/2‑139 (MQ=255) aaaCCCTGGCCTAAGTGGGCCGGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaaa < 3:224151/138‑1 (MQ=255) ccccGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGa < 5:160011/149‑1 (MQ=255) ccccGGCCCACATAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGATGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGAGGTGa > 1:20413/1‑149 (MQ=255) ccGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACg < 5:110432/149‑1 (MQ=255) gCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGaa > 3:169102/1‑149 (MQ=255) cACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACgg < 5:189607/149‑1 (MQ=255) cTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGtt > 7:42668/1‑149 (MQ=255) | TCTCCAGTTCGTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTCTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGG‑CAGCCAGTTGTTCCAGCGCGGACTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTT > NC_002947/650090‑650386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |