Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,110,367 | C→A | 6.9% | L381F (TTG→TTT) | PP_5361 ← | protein P47K |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,110,367 | 0 | C | A | 6.9% | 184.2 / 3.2 | 58 | L381F (TTG→TTT) | PP_5361 | protein P47K |
Reads supporting (aligned to +/- strand): ref base C (26/28); new base A (2/2); total (28/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01 |
CCATCCTGCAGCACTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATCCA > NC_002947/6110222‑6110515 | ccATCCTGCAGCACTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAg > 8:70880/1‑149 (MQ=255) cATCCTGCAGCACTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGc > 7:233024/1‑149 (MQ=255) caCTTCGGCCAGGACTTGAGTCGTCTCGCCAAACACCTGAAAGATATCGACTGGTCGGTGTGCCAGGTTCATGCTGCCGCTTCGTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCtt < 4:41373/148‑1 (MQ=255) caCTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCtt > 5:356081/1‑148 (MQ=255) aCTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGa < 3:388097/149‑1 (MQ=255) ttCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCAAAGCCCATTTCTTGATc > 7:172323/1‑149 (MQ=255) tCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATcc > 3:329802/1‑149 (MQ=255) cACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCAAAGCCCATTTCTTGATCCGTCAACAg < 8:172323/149‑1 (MQ=255) gAGGCGTCTCGCCAAACACCTGAAAGCAATCCACAGCTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGgcat < 2:380431/148‑1 (MQ=255) gAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCa < 1:353162/125‑1 (MQ=255) gAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCa > 2:353162/1‑125 (MQ=255) ctcGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAg > 5:105316/1‑149 (MQ=255) cGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCGTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAggg < 4:274440/149‑1 (MQ=255) ccAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCt < 6:105316/149‑1 (MQ=255) ccAAACACCTGAAAGATAACCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGTCCAAATGGGTCATGTAAACCCAGCCAGCCCATCTGACCCAAGCCCATTTCTTGATCCGTCCTCAGGCATGCATCCAGGGCt > 4:76589/1‑149 (MQ=255) aaaCACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCtgt < 2:223614/149‑1 (MQ=255) cTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCGATTTCTTGTTCCGTCAACAGGCATGCATCCAGGGCTGTGGATaa < 1:7811/149‑1 (MQ=255) aaaGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAAttt > 2:410890/1‑149 (MQ=255) aaaGATATCCACAGGGCGGGGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAAtt < 2:134029/148‑1 (MQ=255) aaGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAAtttt < 1:31466/149‑1 (MQ=255) tatatCCACAGGTCGGTGAGGCAGGTTCATGCTGCCGCTTCCTCATTCCATGGGCGAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTc < 4:329802/148‑1 (MQ=255) gATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTc < 8:233024/149‑1 (MQ=255) gATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTc < 1:410890/149‑1 (MQ=255) ccACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCtgt > 1:382929/1‑132 (MQ=255) ccACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCtgt < 2:382929/132‑1 (MQ=255) cacaGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTc > 1:328768/1‑149 (MQ=255) ggTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGata < 2:328768/149‑1 (MQ=255) gTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGatat > 4:255321/1‑149 (MQ=255) ccAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCaa > 2:340110/1‑149 (MQ=255) gctgcCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTc < 1:188293/132‑1 (MQ=255) gctgcCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTc > 2:188293/1‑132 (MQ=255) gctgcCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCaa > 7:96203/1‑149 (MQ=255) ctgcCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAAc < 3:255321/149‑1 (MQ=255) gCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGcc > 1:208443/1‑130 (MQ=255) gCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGcc < 2:208443/130‑1 (MQ=255) cTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCgg < 1:217953/148‑1 (MQ=255) cTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCgg < 7:70880/148‑1 (MQ=255) ttccggcATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCAAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCaa < 7:393261/131‑1 (MQ=255) ttccggcATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCAAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCaa > 8:393261/7‑137 (MQ=255) ccATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCAc < 8:96203/149‑1 (MQ=255) tGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAg > 2:323667/1‑46 (MQ=255) gCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGgtgt > 8:279616/1‑149 (MQ=255) aaaTGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCgg < 8:332390/133‑1 (MQ=255) aaaTGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCg > 1:106314/1‑142 (MQ=255) aaaTGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCg < 2:106314/142‑1 (MQ=255) gTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTc > 2:171651/1‑148 (MQ=255) gTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGcc < 8:163326/99‑1 (MQ=255) gTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGcc > 7:163326/1‑99 (MQ=255) gTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCTCCGGTGTCGGCGGTCCAgtgt < 3:76589/149‑1 (MQ=255) aCGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTc > 4:374464/1‑148 (MQ=255) cGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTc > 4:303125/1‑147 (MQ=255) gCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATa > 6:154230/1‑98 (MQ=255) gCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATa < 5:154230/98‑1 (MQ=255) cagccagcCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGa < 6:356081/149‑1 (MQ=255) cagccCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCg > 3:67113/1‑148 (MQ=255) cccATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCAtt > 7:289131/1‑149 (MQ=255) tgtgACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCgtg > 7:82345/1‑149 (MQ=255) aCCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTAt < 3:374464/149‑1 (MQ=255) cccAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATc < 7:279616/149‑1 (MQ=255) ccAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATcc < 8:82345/149‑1 (MQ=255) ccAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCAAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATc > 4:319857/1‑148 (MQ=255) cAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGTCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATCca < 1:275634/149‑1 (MQ=255) | CCATCCTGCAGCACTTCGGCCAGCACTTGAGGCGTCTCGCCAAACACCTGAAAGATATCCACAGGTCGGTGAGCCAGGTTCATGCTGCCGCTTCCTCATGCCATGGGCCAAATGGGTCAGGTAAACGCAGCCAGCCCATGTGACCCAAGCCCATTTCTTGATCCGTCAACAGGCATGCATCCAGGGCTGTGGATAATTTTTCGACGTCGATATTCTGCCCAATAAACACCAACTCCTGTCGGCAGTCACCGGTGTCGGCGGTCCAGTGTTTCAAGATCGCATTCGTGTTATCCA > NC_002947/6110222‑6110515 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |