Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 188,615 | A→G | 8.6% | T242A (ACC→GCC) ‡ | PP_0165 → | GGDEF domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 188,615 | 0 | A | G | 8.6% | 155.5 / 5.7 | 58 | T242A (ACC→GCC) ‡ | PP_0165 | GGDEF domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (28/25); new base G (2/3); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01 |
CAGCCTGCCAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTACCGACCA > NC_002947/188470‑188763 | cAGCCTGCCAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCg > 4:322812/1‑149 (MQ=255) gCCTGCCAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCggg < 6:132229/149‑1 (MQ=255) gCCTGCCAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCggg < 7:153041/149‑1 (MQ=255) ccAGAGTTGCCACGCACGCCGGAGCTCCGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGt < 3:332107/148‑1 (MQ=255) ccAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGt < 2:70286/148‑1 (MQ=255) ttGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCCGGTCAGGCTGTcctggta < 3:302780/149‑7 (MQ=255) ttGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCCGGTCAGGCTGTcctggta < 3:740/149‑7 (MQ=255) gCCACGCACGCCGGAGCTACGCTGCGTAGCGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAAccgc < 2:126956/148‑1 (MQ=255) gCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAAccgc < 8:369640/148‑1 (MQ=255) cacgcacgCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCCGGTCAGGCTGTcctg < 5:316447/142‑4 (MQ=255) cacgcacgCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCCGGTCAGGCTGTcctg > 6:316447/1‑139 (MQ=255) acgcCGTAGCTACGCCGCGTAGTGCAAGCGAGGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTAttt < 3:322812/149‑1 (MQ=255) gcCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTAtttt > 8:102968/1‑148 (MQ=255) gacGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCACTGTTCAACGATCAGGCAGAGAGAAGTGAGCGGCTTCGTGCGGAGTCCTACCAGGACAGCCTGAACGGCCAGACGAACCGCAGCTAtttt > 6:30071/3‑148 (MQ=255) gCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATg > 5:58539/1‑148 (MQ=255) cgcgTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCa < 7:292797/143‑1 (MQ=255) cgcgTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCa > 8:292797/1‑143 (MQ=255) aGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATc > 8:126919/1‑149 (MQ=255) gATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCggg > 1:190574/1‑100 (MQ=255) gATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCggg < 2:190574/100‑1 (MQ=255) gATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGc > 6:405520/1‑148 (MQ=255) aTGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCgg < 7:96006/141‑1 (MQ=255) aTGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCgg > 8:96006/1‑141 (MQ=255) aaCCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACa > 8:354239/1‑133 (MQ=255) aaCCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACa < 7:354239/133‑1 (MQ=255) gATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTgg > 3:226693/1‑146 (MQ=255) gTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGACTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGAcgc > 5:289582/1‑149 (MQ=255) tCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCt < 6:96872/118‑1 (MQ=255) tCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCt > 5:96872/1‑118 (MQ=255) gaAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGAcgcgcgcg > 1:45104/1‑149 (MQ=255) aaGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTAc > 2:271111/1‑149 (MQ=255) aaGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTAc < 6:58539/149‑1 (MQ=255) aGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTAcc > 2:412255/1‑149 (MQ=255) cccTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTAttt > 1:110075/1‑91 (MQ=255) cccTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTAttt < 2:110075/91‑1 (MQ=255) cTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGAcgc < 4:44234/131‑1 (MQ=255) cTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGAcgc > 3:44234/1‑131 (MQ=255) aCCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTa < 4:89025/108‑1 (MQ=255) aCCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTtgct > 1:56773/1‑149 (MQ=255) cGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTtgctgc < 2:149662/149‑1 (MQ=255) gCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCggg < 5:405520/149‑1 (MQ=255) gCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCa < 7:126919/149‑1 (MQ=255) cGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAgg > 8:255610/1‑149 (MQ=255) cAGTGAGCGGCTGCGTTCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCAGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTTCTTTTGCTGCGGGTTCAGGGCctgg < 5:30071/149‑1 (MQ=255) cAGTGAGCGGCTGCGTGCTGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCctgg < 2:2619/149‑1 (MQ=255) tGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCctggctg < 2:56773/149‑1 (MQ=255) aGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCtggctggc < 1:412255/149‑1 (MQ=255) gCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTtgc > 5:321662/1‑125 (MQ=255) gCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTtgc < 6:321662/125‑1 (MQ=255) cGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCt > 6:274145/1‑149 (MQ=255) gcggttcgACAGCCCGGTCAGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTggcg > 5:106060/8‑149 (MQ=255) cTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTggcg > 7:5947/1‑149 (MQ=255) tACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTggcgg > 5:117025/1‑149 (MQ=255) aCCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTggcggc < 7:102968/149‑1 (MQ=255) gACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCg > 8:132591/1‑149 (MQ=255) ccTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTAcc > 3:221517/1‑148 (MQ=255) ccTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTAcc > 6:198660/1‑148 (MQ=255) ccTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTACCg > 8:114555/1‑149 (MQ=255) aCCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTACCGACCa < 7:114555/149‑1 (MQ=255) | CAGCCTGCCAGAGTTGCCACGCACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTGCGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGGTTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTACCGACCA > NC_002947/188470‑188763 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |