Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 893,369 | A→G | 6.8% | Y116H (TAC→CAC) | pta ← | phosphate acetyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 893,369 | 0 | A | G | 6.8% | 170.4 / 2.5 | 59 | Y116H (TAC→CAC) | pta | phosphate acetyltransferase |
Reads supporting (aligned to +/- strand): ref base A (32/23); new base G (2/2); total (34/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 |
CTTTCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGCCAGGCTCA > NC_002947/893222‑893512 | cTTTCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGCGCAGTTCGTTTTCGGGGGCCGCTACCAGGATTACCTCGCCATCCAGGCTCTTGGCCAGGTGCAGGTTGCCCC‑GCGCTGCGTAg > 5:318032/1‑149 (MQ=255) cTTTCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAg > 1:379214/1‑149 (MQ=255) tttCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGc > 7:13675/1‑149 (MQ=255) tttCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGc > 5:209099/1‑149 (MQ=255) cgTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACAAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCtggcgtggcg > 4:333332/1‑149 (MQ=255) ggCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGt < 6:255521/148‑1 (MQ=255) ggCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTg < 6:209099/149‑1 (MQ=255) gccgccAAACAGTTGGGACTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGTGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTgg > 4:381462/1‑149 (MQ=255) cgccAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGCCCC‑GCCCTGCGTAGCTGGCGTGGCGCGTGGGc > 2:198244/1‑149 (MQ=255) cgccAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTggg > 4:282046/1‑148 (MQ=255) ttCGACCCGGCCAGACAGCTCGCTGAGCAGTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCa > 6:320691/1‑149 (MQ=255) aCCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGt > 6:260021/1‑148 (MQ=255) cccGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTGGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCa > 8:42210/1‑149 (MQ=255) gCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAg < 3:381462/149‑1 (MQ=255) cTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACca < 8:159734/125‑1 (MQ=255) cTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAAcc > 8:323298/1‑130 (MQ=255) cTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAAcc < 7:323298/130‑1 (MQ=255) gCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGAc > 7:23143/1‑120 (MQ=255) gCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGAc < 8:23143/120‑1 (MQ=255) aGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCt < 3:282046/148‑1 (MQ=255) gCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACAATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTgg < 3:333332/149‑1 (MQ=255) cACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGt < 5:320691/149‑1 (MQ=255) ttCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTa > 8:89403/1‑147 (MQ=255) ttCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTa > 6:395157/1‑147 (MQ=255) ttCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTa > 1:3491/1‑147 (MQ=255) cGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTaga < 5:260021/147‑1 (MQ=255) gTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCATGTCATTGCCGACGCAGGCTTGCTGGTAGAGGc > 2:86730/1‑149 (MQ=255) gTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCATGTCATTGCCGACGCAGGCTTGCTGGTAGAGGc > 2:384948/1‑149 (MQ=255) gggCCGATACCGGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGAtt > 4:108022/1‑149 (MQ=255) gCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGAttt > 7:254941/1‑148 (MQ=255) cGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAgg > 7:99872/1‑136 (MQ=255) cGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAgg < 8:99872/136‑1 (MQ=255) gATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTGGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATttcttc < 7:42210/149‑1 (MQ=255) tACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGTGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATttcttc < 8:288974/147‑1 (MQ=255) tACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGTGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCaa > 7:288974/1‑149 (MQ=255) tACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGTGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCaa < 1:198244/149‑1 (MQ=255) gcAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGCCGC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGATGCGGTTGATTTCTTCAag < 6:318032/147‑1 (MQ=255) ccAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAag > 7:349670/1‑148 (MQ=255) ccAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAag < 2:379214/148‑1 (MQ=255) ccTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc < 5:395157/148‑1 (MQ=255) ccTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc < 8:254941/148‑1 (MQ=255) cTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACaa > 1:7135/1‑86 (MQ=255) cTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACaa < 2:7135/86‑1 (MQ=255) cTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc > 5:146582/1‑147 (MQ=255) cTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCa > 3:28686/1‑149 (MQ=255) tCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCCTGCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc > 1:279575/1‑147 (MQ=255) tCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTGGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAg > 2:398778/1‑149 (MQ=255) ctctTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTTGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGcc < 6:128510/149‑1 (MQ=255) tGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc > 3:318015/1‑130 (MQ=255) tGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTc < 4:318015/130‑1 (MQ=255) ggCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGa < 7:89403/146‑1 (MQ=255) gTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCt > 1:156387/1‑149 (MQ=255) ccc‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCACTCGACGTGGGc > 1:365523/1‑148 (MQ=255) cc‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGc > 5:317327/1‑147 (MQ=255) gcgcTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGCCAgg < 2:279575/149‑1 (MQ=255) cTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGCCAGGCt > 4:216134/1‑148 (MQ=255) tGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTg > 2:358325/1‑138 (MQ=255) tGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTg < 1:358325/138‑1 (MQ=255) cGTGGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGCCAGGCTCa < 1:398778/147‑1 (MQ=255) | CTTTCGGGTCGCGTGGGCCGCCAAACAGTTGGGCCTGCAGTTCGACCCGGCCAGACAGCTCGCTGAGCACTTCGTTTTCCGGGGCCGATACCAGGATTACCTCGGCATCCAGGCTCTTGGCCAGGTGCAGGTTGACCC‑GCGCTGCGTAGCTGGCGTGGCGCGTGGGCACCATTCCCTCGACCACAACCACGTCATTGCCGACGCAGGCTTGCTGGTAGAGGCGGATGATTTCTTCAAGCAGCTCGTCCAGTTGGCCATCGCCGAGCATGCGCTCGACGTGGGCCAGGCTCA > NC_002947/893222‑893512 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |