Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 955,080 | T→A | 10.4% | intergenic (+34/‑279) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 955,080 | 0 | T | A | 10.4% | 123.0 / 6.0 | 48 | intergenic (+34/‑279) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
Reads supporting (aligned to +/- strand): ref base T (18/25); new base A (2/3); total (20/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.89e-01 |
AGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATA > NC_002947/954934‑955223 | aGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGCTGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACtgt > 3:243308/1‑149 (MQ=255) gTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACtgt‑g > 4:266869/1‑149 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCgggg < 8:177346/149‑1 (MQ=255) cGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGt < 1:231420/149‑1 (MQ=255) gCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATTGGGCGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACATACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGt > 1:101736/1‑149 (MQ=255) gtgtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGttttcgt < 7:292922/149‑4 (MQ=255) ggCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTgggg > 1:177903/1‑149 (MQ=255) gCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGtt < 1:226061/137‑1 (MQ=255) gCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGtt > 2:226061/1‑137 (MQ=255) aTCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACAAAAACCCCGG‑CACAGTGGCCGGGGttttcgt < 8:267983/134‑4 (MQ=39) aTCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACAAAAACCCCGG‑CACAGTGGCCGGGGttttcgt > 7:267983/1‑131 (MQ=39) aTCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGCGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTc < 2:101736/149‑1 (MQ=255) cTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCtg > 2:355330/1‑149 (MQ=255) ccTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCttag > 8:1354/1‑147 (MQ=255) cTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCTGGCCTCTTcgc < 3:202206/149‑1 (MQ=255) cTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTcgc < 6:364447/149‑1 (MQ=255) aGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 8:190513/148‑1 (MQ=255) aGCGAGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 7:185942/148‑1 (MQ=255) gCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGt < 2:177903/149‑1 (MQ=255) tga‑tgGGTGGGTACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCAGCCTGTTTCACGAAAACCCCGGCCACTGG‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAccc < 4:371622/149‑1 (MQ=255) ga‑tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCg > 2:267671/1‑149 (MQ=255) a‑tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGc < 1:267671/149‑1 (MQ=255) a‑tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGc < 3:266869/149‑1 (MQ=255) gtgtGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTcgc < 5:409299/133‑1 (MQ=255) gtgtGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTcgc > 6:409299/1‑133 (MQ=255) ggACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCTGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTcc > 7:246858/1‑112 (MQ=255) aGCCAGACCGCTGCGGATGTGGTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGt < 4:157037/129‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 2:269519/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt > 1:269519/1‑149 (MQ=255) ccGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTc > 5:51671/1‑116 (MQ=255) ccGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTc < 6:51671/116‑1 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg > 5:323658/1‑119 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 6:323658/119‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTT‑CTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 3:65512/149‑1 (MQ=25) cgtaTGTGCTGATGACCAACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCgg < 8:177015/146‑1 (MQ=255) cGGATGTGCTGATGACCTACGCAAGCTGAAACTGCTTCCTGTTTAACGAAAACCACGGCCACTGT‑GCCGGGGTTTTTTTTTGGTGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 6:193968/149‑1 (MQ=25) gATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGt < 1:355330/149‑1 (MQ=255) gCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 5:378986/113‑1 (MQ=255) gCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc > 6:378986/1‑113 (MQ=255) atgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCggg < 4:6893/104‑1 (MQ=255) atgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCggg > 3:6893/1‑104 (MQ=255) acgcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTa < 1:29133/120‑1 (MQ=255) acgcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTa > 2:29133/1‑120 (MQ=255) gTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa < 6:45833/89‑1 (MQ=255) gTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa > 5:45833/1‑89 (MQ=255) tttCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTATTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCCCTGCTACAAGGTTGCGGTAGGAGCGGGGTTACCCGCGGAGTGGCCAGCACAGAAAAATAAAAATTcc > 1:59425/1‑149 (MQ=37) gAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt > 2:246120/1‑92 (MQ=255) gAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 1:246120/92‑1 (MQ=255) aaCCCCGG‑CACAGTGGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCACTTAGCGGGTAAACCCGCTACTACAAGGTTGCGGTAGGAGCGGGTTCACCCGGGAAGAGGGCACCACAGAAAAATAAAAATAACTGAATTTc > 8:152452/1‑148 (MQ=25) gCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAACCGGTACTACAAGGTTCCTGTAGGAGCCGGTTTAACAGCGAAAAGGCCAGCACAGAAAAATAAGAATACATGATTTTCAAAAAATa > 5:371418/1‑149 (MQ=37) | AGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGA‑TGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATA > NC_002947/954934‑955223 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |