| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,634 | C→T | 32.9% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 32.9% | 149.8 / 93.9 | 119 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (42/37); new base T (22/17); total (64/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
TCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGG > NC_002947/195492‑195779 | tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACcgc > 5:148503/1‑148 (MQ=39) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACg > 2:280407/1‑149 (MQ=39) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGc > 7:135544/1‑149 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCCGTCGACACCAC‑TACCGCGAcc > 2:259491/1‑136 (MQ=12) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGt < 6:148503/149‑1 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTGGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGt < 1:218695/149‑1 (MQ=12) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGAcc < 2:50969/131‑1 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 2:62001/1‑149 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCg < 2:350091/142‑1 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCgggtatac > 1:350091/1‑143 (MQ=255) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTAACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 1:261871/149‑1 (MQ=255) aacGGTTCGACCGTCAGCGTCACCATCGTGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 1:24679/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGACGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:127077/1‑148 (MQ=12) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 2:100490/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 4:360956/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 2:40423/1‑149 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:69213/1‑149 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 4:400715/1‑149 (MQ=17) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 4:130271/149‑1 (MQ=38) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa < 1:62001/149‑1 (MQ=17) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 6:360987/143‑1 (MQ=17) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 5:360987/1‑143 (MQ=17) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 8:58370/1‑149 (MQ=17) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 6:122371/1‑149 (MQ=17) cGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 6:323210/149‑1 (MQ=39) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa < 6:106640/139‑1 (MQ=37) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 5:106640/1‑139 (MQ=37) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 5:133914/135‑1 (MQ=37) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:128043/1‑135 (MQ=37) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 5:128043/135‑1 (MQ=37) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:284948/1‑149 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:219127/1‑149 (MQ=39) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 5:265296/1‑149 (MQ=39) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:77315/1‑148 (MQ=39) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 7:301443/148‑1 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 3:189449/128‑1 (MQ=38) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 4:189449/1‑128 (MQ=38) gaACGCCACAGGCGGTAATTTCGAGCAACTCACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 1:34984/1‑149 (MQ=12) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 3:205987/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:280407/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTc > 2:187795/1‑112 (MQ=12) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc > 6:229238/2‑149 (MQ=11) ggTAATTTGGAGCATCTGACGGCGAATCCGACCCCGGCTGAGACGACGATCAACGACTCGGTAGATGCGAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGTGTGATCACTTACACCTTGACCCTGAGCAACCCTGc < 3:106802/149‑1 (MQ=11) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAA‑CACCGCGACCCTGACGGCGAGACCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 5:291471/149‑1 (MQ=255) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 5:327422/1‑149 (MQ=39) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 8:239553/1‑120 (MQ=17) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 1:176201/1‑148 (MQ=17) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 7:93087/1‑149 (MQ=17) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 7:120705/148‑1 (MQ=39) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg > 3:184571/1‑149 (MQ=39) cAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCgg > 6:255775/1‑148 (MQ=255) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg > 5:24738/1‑145 (MQ=17) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 6:24738/145‑1 (MQ=17) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCCGTaa > 8:11505/1‑149 (MQ=25) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 6:370127/1‑124 (MQ=17) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 8:254327/129‑1 (MQ=18) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc > 7:254327/1‑129 (MQ=18) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc > 5:275317/1‑149 (MQ=2) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCg > 7:146527/1‑149 (MQ=9) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 7:45950/121‑1 (MQ=17) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 8:45950/1‑121 (MQ=17) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 1:159885/1‑149 (MQ=12) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 7:58370/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 2:34984/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 8:298689/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 7:220493/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 4:184571/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 7:112309/1‑149 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 3:70942/91‑1 (MQ=33) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc > 4:70942/1‑91 (MQ=33) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 7:152908/1‑148 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTAGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 7:60753/1‑148 (MQ=255) ccccGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCTAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 2:311540/149‑1 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 8:152908/149‑1 (MQ=40) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg > 8:38011/1‑149 (MQ=39) tCAGACCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa > 3:3980/1‑149 (MQ=37) aCCACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 2:60880/1‑149 (MQ=255) cACGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGGAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa < 1:11664/149‑1 (MQ=255) cGATCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGTTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 1:60880/149‑1 (MQ=255) tCAACGACTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 8:248821/1‑149 (MQ=255) tCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 2:90627/1‑149 (MQ=39) aCGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg > 6:236586/1‑129 (MQ=40) aCGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 5:236586/129‑1 (MQ=40) aCGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 6:38215/135‑1 (MQ=40) aCGACTCGGTCGACACCAC‑CACCGCGACCCAGACGGCGAGCCCGTCGCTCACCGAAGGCGGCGTGATCAATTACACCGTGACCCTGAGCACGCCAGCACAGACGCCCGTAACAGTGAAcca > 8:81905/1‑120 (MQ=11) gACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 4:67463/149‑1 (MQ=39) gACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 3:67463/1‑149 (MQ=39) cTCGGTCGACACCAC‑TACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 3:400715/149‑1 (MQ=255) gTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 7:317304/143‑1 (MQ=39) gTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 8:317304/1‑143 (MQ=39) gACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 1:100490/148‑1 (MQ=39) gACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc < 2:284948/149‑1 (MQ=39) accac‑taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTCCACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 4:127077/149‑1 (MQ=255) accac‑taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 7:40015/1‑147 (MQ=255) accac‑caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 4:77315/149‑1 (MQ=39) ccac‑caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt < 2:189479/106‑1 (MQ=255) ccac‑caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 2:219127/149‑1 (MQ=39) cac‑taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 3:74879/1‑149 (MQ=255) cac‑caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 6:147206/1‑149 (MQ=39) ac‑caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 1:400299/1‑138 (MQ=40) | TCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCAC‑CACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGG > NC_002947/195492‑195779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |