| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,103,280 | C→A | 5.3% | D13E (GAC→GAA) | murA → | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,103,280 | 0 | C | A | 5.3% | 308.0 / 3.8 | 95 | D13E (GAC→GAA) | murA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (42/47); new base A (4/2); total (46/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
CCTGAATCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCAT > NC_002947/1103134‑1103426 | ccTGAATCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACgg < 2:113616/149‑1 (MQ=255) cTGAATCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGc > 4:63690/1‑149 (MQ=255) aaTCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCga < 2:117836/148‑1 (MQ=255) aTCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCgaga < 6:360275/149‑1 (MQ=255) tCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGc > 5:394892/1‑144 (MQ=255) cGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATcc > 7:393260/1‑149 (MQ=255) gTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATcc > 1:295551/1‑148 (MQ=255) gTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATcc < 2:295551/148‑1 (MQ=255) aTCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCAtt > 3:145892/1‑149 (MQ=255) aTCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCAtt > 3:298101/1‑149 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGAt < 4:142399/138‑1 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGAt > 3:142399/1‑138 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATcc < 5:394509/140‑1 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATcc > 6:394509/1‑140 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCgg > 1:204555/1‑149 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCgg > 7:308152/1‑149 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCg > 5:114726/1‑148 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCg < 6:114726/148‑1 (MQ=255) ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGAAGGCGAGATCCGCATTTCgg > 8:138472/1‑149 (MQ=255) ccAATGGCACCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGCCGGCGAG‑CCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCgg > 7:317595/1‑149 (MQ=255) aaTGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCga < 1:180880/133‑1 (MQ=255) aaTGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCga > 2:180880/1‑133 (MQ=255) tGGCAGCATCCATGCGGTGACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGgcgc < 4:326691/149‑1 (MQ=255) gcaggaTGCATGCGGTAACCATGAAATTTTTCAGCAGCGCATCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGcgcg < 2:262654/148‑1 (MQ=255) cagcaTCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGa > 4:405266/1‑148 (MQ=255) aTGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAg > 6:265103/1‑149 (MQ=255) cGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGcc < 6:188892/148‑1 (MQ=255) ggTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCt < 8:393260/149‑1 (MQ=255) ccATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGa > 5:205837/1‑149 (MQ=255) aTGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGc < 5:300905/144‑1 (MQ=255) aTGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGc > 6:300905/1‑144 (MQ=255) aTGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGAtt > 1:258838/1‑149 (MQ=255) gAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGAACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTc > 1:322805/1‑149 (MQ=255) gAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTc < 5:212654/148‑1 (MQ=255) gAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTc > 6:212654/1‑148 (MQ=255) aaaTTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCt < 6:394892/148‑1 (MQ=255) aaTTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTgg < 2:204555/149‑1 (MQ=255) aTTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGc < 7:172073/149‑1 (MQ=255) tttttCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCa < 3:63690/149‑1 (MQ=255) ttCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGcc > 3:138891/1‑149 (MQ=255) tCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCa > 8:70131/1‑149 (MQ=255) agcagcGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGATCTCGCCGTCAAGGCGAGcgccgcca > 3:183768/1‑104 (MQ=37) agcagcGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGATCTCGCCGTCAAGGCGAGcgccgcca > 3:177366/1‑104 (MQ=37) agcagcGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGATCTCGCCGTCAAGGCGAGcgccgcca < 4:177366/106‑3 (MQ=37) agcagcGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGATCTCGCCGTCAAGGCGAGcgccgcca < 4:183768/106‑3 (MQ=37) gcagcgcagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGc < 1:142723/131‑1 (MQ=255) gcagcgcagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGc > 2:142723/1‑131 (MQ=255) agcgcagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGAAGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCctg > 6:378423/1‑149 (MQ=255) cagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTgg > 8:64702/1‑149 (MQ=255) cagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTgg < 2:258838/149‑1 (MQ=255) ccTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCg < 4:298101/149‑1 (MQ=255) aGCGCACCTGATCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCg < 1:137490/148‑1 (MQ=255) aGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGc > 2:99615/1‑123 (MQ=255) aGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGc < 1:99615/123‑1 (MQ=255) aGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCg < 3:405266/148‑1 (MQ=255) aGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCg < 4:145892/148‑1 (MQ=255) aGCACACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCg < 4:83323/148‑1 (MQ=255) aCCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGcgcg < 5:403238/92‑1 (MQ=255) aCCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGcgcg > 6:403238/1‑92 (MQ=255) aCCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCAcc > 7:249258/1‑149 (MQ=255) aGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTggg > 7:347712/1‑149 (MQ=255) aGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTggg < 8:297014/149‑1 (MQ=255) aGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg < 6:205837/148‑1 (MQ=255) ccAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCCTTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCa > 8:371057/1‑149 (MQ=255) ttGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTg < 4:138891/149‑1 (MQ=255) gcggcgAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCg > 6:159834/1‑149 (MQ=255) gcggcgAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCg < 6:57977/149‑1 (MQ=255) gcgAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCAc < 7:138472/149‑1 (MQ=255) gag‑aCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCt < 8:308152/149‑1 (MQ=255) g‑aCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCa < 3:165100/79‑1 (MQ=255) g‑aCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCa > 4:165100/1‑79 (MQ=255) aCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCa < 6:66533/149‑1 (MQ=255) aCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCa < 8:249258/149‑1 (MQ=255) tCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCAc > 5:403885/1‑148 (MQ=255) cAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGa > 1:31866/1‑148 (MQ=255) aaTGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGAc > 2:349435/1‑148 (MQ=255) aTGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCctgct < 6:15577/101‑1 (MQ=255) aTGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCctgct > 5:15577/1‑101 (MQ=255) aCAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATcac > 6:328852/1‑148 (MQ=255) cAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGTGCAACCTGCCGCACCTGCACGACATcacca < 1:239183/149‑1 (MQ=255) cAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATcacca < 1:245254/149‑1 (MQ=255) aCTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCAccacca > 4:64787/1‑149 (MQ=255) tGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCt > 6:127486/1‑130 (MQ=255) tGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCt < 5:127486/130‑1 (MQ=255) tattaGTGGCGGCGCGCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCg < 7:187455/149‑1 (MQ=255) ttaCTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg < 3:54858/108‑1 (MQ=255) ttaCTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg > 4:54858/1‑108 (MQ=255) cTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCt < 2:31866/148‑1 (MQ=255) ggcggcGCTCGCCTTGACGGCGAGATCCGCATTTAGGGCGCGAAAAACGCAGCCCTGCCGATTCTTGCAGCCACCCTGCTGGCCGATGGCCCCGTCACCCTGGGCAACCAGCCGCACCAGCACCACATCACCACCATGATCGAGCTGt > 2:410363/1‑148 (MQ=255) ggcgCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCgg < 2:322805/149‑1 (MQ=255) gcgcTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCggg < 5:328852/149‑1 (MQ=255) cTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATggg < 6:403885/149‑1 (MQ=255) gACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATcacca < 1:331037/118‑1 (MQ=255) gACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATcacca > 2:331037/1‑118 (MQ=255) gACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCAt > 8:14557/1‑149 (MQ=255) | CCTGAATCCGTGGATCGCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAG‑ACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCAT > NC_002947/1103134‑1103426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |