Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,175,201 A→G 5.6% E92E (GAA→GAG PP_1030 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,175,2010AG 5.6% 208.6 / 2.2 72E92E (GAA→GAGPP_1030hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (35/32);  new base G (2/2);  total (37/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01

GGTAACCGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAGCCAT  >  NC_002947/1175058‑1175349
                                                                                                                                                |                                                                                                                                                    
ggTAACCGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGc                                                                                                                                                 <  1:347447/149‑1 (MQ=255)
    aCCGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCTTCGAGGAAGccttc                                                                                                                                             <  2:204545/149‑4 (MQ=255)
     ccGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGt                                                                                                                                             <  1:101708/149‑1 (MQ=255)
      cGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTg                                                                                                                                           >  3:291409/1‑149 (MQ=255)
        cATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGcc                                                                                                                                         >  8:110542/1‑149 (MQ=255)
         aTGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGccc                                                                                                                                        <  8:174205/149‑1 (MQ=255)
            ggCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCTAAGAAGCCGGTTGCCCGGa                                                                                                                                     <  2:177022/149‑1 (MQ=255)
             gCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCgaagaa                                                                                                                                                   <  1:59778/134‑1 (MQ=255)
             gCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCgaagaa                                                                                                                                                   >  2:59778/1‑134 (MQ=255)
              ccATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGt                                                                                                                                   >  5:425373/1‑149 (MQ=255)
               cATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCgg                                                                                                                                              >  1:280127/1‑137 (MQ=255)
               cATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCgg                                                                                                                                              <  2:280127/137‑1 (MQ=255)
                aTGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGc                                                                                                                                 <  6:425373/149‑1 (MQ=255)
                 tGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGcc                                                                                                                                >  2:368557/1‑149 (MQ=255)
                        gcggcAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGa                                                                                                                         <  1:368557/149‑1 (MQ=255)
                         cggcAGGGGCGCTCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGag                                                                                                                        <  8:381352/149‑1 (MQ=255)
                          ggcAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCTCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGATTGCCCGGAGAGCCGGCTCGagg                                                                                                                       >  6:290918/1‑149 (MQ=255)
                            cAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGaggta                                                                                                                     <  1:133410/149‑1 (MQ=255)
                            cAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGa                                                                                                                         <  8:328760/145‑1 (MQ=255)
                            cAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGa                                                                                                                         >  7:328760/1‑145 (MQ=255)
                              ggggCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGaggtagg                                                                                                                   >  6:118267/1‑149 (MQ=255)
                                   gcgcAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGc                                                                                                              <  7:110542/149‑1 (MQ=255)
                                     gcAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCg                                                                                                            >  2:12011/1‑149 (MQ=255)
                                     gcAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCg                                                                                                            <  4:291409/149‑1 (MQ=255)
                                       aaaGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGTGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCgtt                                                                                                          >  4:406689/1‑149 (MQ=255)
                                          gTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCgttgtt                                                                                                       <  1:12011/149‑1 (MQ=255)
                                           tGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTc                                                                                                      <  1:41393/149‑1 (MQ=255)
                                             gCCCTGCACCCGGAAAAACTGCTCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCAGCGAAGGCTTCCTCGAAGAAGCCGATTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCg                                                                                                     <  5:290918/148‑1 (MQ=255)
                                              cccTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGaa                                                                                                   <  6:336069/149‑1 (MQ=255)
                                               ccTGCACCCGGAAAAACTGCCCTTCGGTGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGaaa                                                                                                  <  3:406689/149‑1 (MQ=255)
                                                 tGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGc                                                                                                >  6:370100/1‑149 (MQ=255)
                                                 tGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGc                                                                                                >  5:426090/1‑149 (MQ=255)
                                                    aCCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCt                                                                                              >  3:338794/1‑148 (MQ=255)
                                                    aCCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCt                                                                                              <  4:338794/148‑1 (MQ=255)
                                                    aCCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTg                                                                                             <  2:300253/149‑1 (MQ=255)
                                                     cccGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAATCGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTgg                                                                                            <  7:123362/149‑1 (MQ=255)
                                                      ccGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCgaa                                                                                                                                                      <  6:314275/90‑1 (MQ=255)
                                                      ccGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCgaa                                                                                                                                                      >  5:314275/1‑90 (MQ=255)
                                                         gAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAaga                                                                                        <  3:267048/149‑1 (MQ=255)
                                                         gAAAAACAGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACCCTGCATCTATACCCCCACCGAAGGCTTACACGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGAAGGTGAGCCGATCTTCGAAAGCCTGGaa                                                                                          >  6:149397/1‑147 (MQ=255)
                                                                    cTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCCCCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCgg                                                                             >  8:322350/1‑149 (MQ=255)
                                                                     ttCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCgg                                                                             >  3:118403/1‑148 (MQ=255)
                                                                     ttCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCATCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAACAGTGGATGCCgg                                                                             >  3:287127/1‑148 (MQ=255)
                                                                           gAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAg                                                                      >  8:137059/1‑149 (MQ=255)
                                                                             aCCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCg                                                                    <  4:118403/149‑1 (MQ=255)
                                                                                        gCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTAcc                                                         >  3:277598/1‑149 (MQ=255)
                                                                                         ccTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACttacctt                                                        >  5:55435/1‑144 (MQ=255)
                                                                                           tGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGc                                                      >  1:160113/1‑149 (MQ=255)
                                                                                            ggAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGCTGAGCCGTTGATCGAAAGCCTGGAAGACTGGATCCCGGCAGTGCGCGACACCTTGACCTGcc                                                     >  2:40467/1‑149 (MQ=255)
                                                                                              aaGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCa                                                   >  8:226527/1‑149 (MQ=255)
                                                                                                   aTGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACtgtg                                              >  5:92374/1‑149 (MQ=255)
                                                                                                       cTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCgg                                           >  6:187281/1‑149 (MQ=255)
                                                                                                       cTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCg                                            <  6:426090/148‑1 (MQ=255)
                                                                                                        tCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGc                                          >  1:411148/1‑149 (MQ=255)
                                                                                                        tCAAACCCTCCATCTATACACCCACCGAAGGCTTACTCGAAGAAGCCGGATGCCCGGAGTGCCCGCGCGAGGAAGGTGAGCCGTTCTACGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCAGCCCACTGTGCGGc                                          >  8:285940/1‑149 (MQ=255)
                                                                                                          aaaCGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCtt                                        >  2:69211/1‑149 (MQ=255)
                                                                                                          aaaCGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCt                                         <  5:370100/148‑1 (MQ=255)
                                                                                                          aaaCGCTGATTTTATACCCCAACGCAAGGCTTCATCCATTAAGCGGGTTGCCCGTATGGCCGGCGGTAGGTAGGTTAGCCTTTTTTCTAAAGCCTGTAATAGTGTATGCCGGATTTTAGCTACAACTTACCTGCCCACTGTGCGGCTTc                                       <  6:55435/149‑1 (MQ=255)
                                                                                                           aaCGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTc                                       <  5:187281/149‑1 (MQ=255)
                                                                                                             cGCTGCATCTATACCCCCACCGACGGCTTCCTCGAAGAAGGCGGTTGCCCGGAGTGACGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGa                                     <  8:270895/149‑1 (MQ=255)
                                                                                                               cTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACt                                                              <  7:390040/122‑1 (MQ=255)
                                                                                                               cTGCATCTATACCACCACCGAAGCCATCCTCGAAGAAGCCGGTTGCCCGGACTGCCGGCGCGAGGTACCTTAGCCGTTTTTCGAAAGCCTGGAAGAGTGGAAGCAGGCAGTGAGCGACAACt                                                              >  8:390040/1‑122 (MQ=255)
                                                                                                                  cATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATg                                <  7:226527/149‑1 (MQ=255)
                                                                                                                      tataCCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACAt                            <  7:137059/149‑1 (MQ=255)
                                                                                                                        ctcccccACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATc                           <  1:146501/146‑1 (MQ=255)
                                                                                                                           ccccACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATc                           >  2:146501/1‑145 (MQ=255)
                                                                                                                             ccACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGc                     <  4:277598/149‑1 (MQ=255)
                                                                                                                               aCCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACGGTGCGGCTGCGAAGATGACATCAATGGCtt                   >  7:393679/1‑149 (MQ=255)
                                                                                                                                   ccggCTTCTTCGAGGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCtt                                        >  5:351143/3‑124 (MQ=255)
                                                                                                                                   ccggCTTCTTCGAGGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCtt                                        <  6:351143/122‑1 (MQ=255)
                                                                                                                                   ccggCTTCTTCGAGGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCAtt               >  6:420748/3‑149 (MQ=255)
                                                                                                                                        ttCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACtt                                                             >  7:319435/1‑98 (MQ=255)
                                                                                                                                        ttCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACtt                                                             <  8:319435/98‑1 (MQ=255)
                                                                                                                                            tCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAg      >  3:316950/1‑149 (MQ=255)
                                                                                                                                            tCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAg      >  6:317200/1‑149 (MQ=255)
                                                                                                                                            tCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAg      >  6:140523/1‑149 (MQ=255)
                                                                                                                                              gaagaaGCCGTTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGACGAGTGGATGCCGGCAGTGATCGACAACTTTACCTGCCCACTGTGCGGCTTCGATGATGACATCAATGGCTTCATTTACCTGCATcc    <  5:118267/149‑1 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTTGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGaa                                    <  2:307693/117‑1 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTGGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGaa                                    >  1:307693/1‑117 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCTGGCTGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAGc     >  1:128758/1‑148 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGc                                             >  3:138536/1‑108 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGc                                             <  4:138536/108‑1 (MQ=255)
                                                                                                                                              gaagaaGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACGTGGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAGc     >  1:137006/1‑148 (MQ=255)
                                                                                                                                                agaagCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAGCCAt  <  1:69211/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GGTAACCGCATGGGCCATGCCCTGGCGGCAGGGGCGCGCAAAGTGGCCCTGCACCCGGAAAAACTGCCCTTCGGCGAACCGGTCAACGGCCTGGAAGTGATGCTCAAACGCTGCATCTATACCCCCACCGAAGGCTTCCTCGAAGAAGCCGGTTGCCCGGAGTGCCGGCGCGAGGTAGGTGAGCCGTTGTTCGAAAGCCTGGAAGAGTGGATGCCGGCAGTGAGCGACAACTTTACCTGCCCACTGTGCGGCTTCGAAGATGACATCAATGGCTTCATTTACCTGCAGCCAT  >  NC_002947/1175058‑1175349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: