| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,197,299 | T→G | 5.2% | S454A (TCG→GCG) ‡ | xcpQ → | type II secretion pathway protein XcpQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,197,299 | 0 | T | G | 5.2% | 284.9 / 5.0 | 90 | S454A (TCG→GCG) ‡ | xcpQ | type II secretion pathway protein XcpQ |
| Reads supporting (aligned to +/- strand): ref base T (44/41); new base G (2/3); total (46/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
CCCTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGC > NC_002947/1197155‑1197446 | cccTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGAt > 3:171442/1‑149 (MQ=255) cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg > 5:198181/1‑149 (MQ=255) cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg > 1:391432/1‑149 (MQ=255) cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg > 1:401872/1‑149 (MQ=255) gTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCAGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCg < 5:247628/148‑1 (MQ=255) tCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCACAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGa > 3:354569/1‑148 (MQ=255) aCCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGacac < 4:332323/149‑1 (MQ=255) ggCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg < 1:108762/149‑1 (MQ=255) cGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCACAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg < 4:354569/148‑1 (MQ=255) gTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGc > 3:41971/1‑149 (MQ=255) aCGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACCGCGGGCGCCGGGACATCGCCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAg < 1:274299/149‑1 (MQ=255) aCGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCa < 7:238498/148‑1 (MQ=255) gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg > 6:185704/1‑142 (MQ=255) gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg < 5:185704/142‑1 (MQ=255) gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGGCAATCgacgac < 8:62506/133‑1 (MQ=255) aGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg < 8:108752/136‑1 (MQ=255) aGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc < 2:391432/149‑1 (MQ=255) aGAACAACGCCAACCCGTACCAGACAATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg > 7:108752/1‑136 (MQ=255) aacaacGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc > 1:300671/1‑147 (MQ=255) aacaacGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc < 2:300671/147‑1 (MQ=255) gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGAt > 6:292309/1‑146 (MQ=255) gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGAt < 5:292309/146‑1 (MQ=255) gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCAc > 7:379367/1‑149 (MQ=255) cccGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCGCGGCCAGCGACGTGCTCACccac > 6:421559/1‑148 (MQ=255) ccGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac > 5:218423/1‑147 (MQ=255) ccAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAgcgc < 7:238750/148‑1 (MQ=255) ccATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATc < 2:401872/149‑1 (MQ=255) cgcAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCaa < 8:379367/149‑1 (MQ=255) gcAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAg < 1:409400/149‑1 (MQ=255) aaGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac > 8:216330/1‑126 (MQ=255) aaGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac < 7:216330/126‑1 (MQ=255) ggAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCa > 3:33853/1‑149 (MQ=255) aGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATgg < 1:195444/149‑1 (MQ=255) gTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAg < 5:337956/123‑1 (MQ=255) gTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAg > 6:337956/1‑123 (MQ=255) ggTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTg > 6:211244/1‑106 (MQ=255) ggTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTg < 5:211244/106‑1 (MQ=255) gTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGa > 8:385028/1‑149 (MQ=255) aaGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACac > 2:216501/1‑148 (MQ=255) gCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACg > 5:69799/1‑149 (MQ=255) tGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGc > 2:317844/1‑149 (MQ=255) gcATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTg > 2:304491/1‑149 (MQ=255) cATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTgg < 7:385028/149‑1 (MQ=255) cATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTgg < 6:198181/149‑1 (MQ=255) aTCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt < 3:116579/149‑1 (MQ=255) tCAAGCCGGAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt < 7:159995/148‑1 (MQ=255) cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGa > 8:349903/1‑132 (MQ=255) cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGa < 7:349903/132‑1 (MQ=255) cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt > 8:159995/1‑147 (MQ=255) aaGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGa < 5:421559/148‑1 (MQ=255) cAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGt > 8:285152/1‑78 (MQ=255) cAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGt < 7:285152/78‑1 (MQ=255) aaTATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCt > 7:290892/1‑149 (MQ=255) atCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCggg > 6:251222/1‑144 (MQ=255) atCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCggg < 5:251222/144‑1 (MQ=255) tCGTCAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAg > 7:314522/1‑116 (MQ=255) tCGTCAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAg < 8:314522/116‑1 (MQ=255) tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATAc < 7:314/135‑1 (MQ=255) tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATAc > 8:314/1‑135 (MQ=255) tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACAAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCgg > 3:107774/1‑142 (MQ=255) tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACAAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCgg < 4:107774/142‑1 (MQ=255) acaacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGc > 5:209075/1‑149 (MQ=255) caacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGcg < 4:171442/149‑1 (MQ=255) aacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGcga < 6:69799/149‑1 (MQ=255) cGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGt < 8:290892/149‑1 (MQ=255) gTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt < 1:304491/149‑1 (MQ=255) ctccTGGACGATGTCCAGGAGGTGTCGTCGATTGCCGTCACAAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg > 2:141289/3‑149 (MQ=255) ctccTGGACGATGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg > 4:35974/3‑149 (MQ=255) cgcCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGa < 1:317844/148‑1 (MQ=255) gcCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg > 1:345081/1‑148 (MQ=255) cTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCAt > 6:151330/1‑92 (MQ=255) cTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCAt < 5:151330/92‑1 (MQ=255) gACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccag > 7:347148/1‑149 (MQ=255) aTCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcga > 4:301384/1‑149 (MQ=255) aTCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcga > 8:213154/1‑149 (MQ=255) tCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgac < 6:209075/149‑1 (MQ=255) gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCga < 6:129800/65‑1 (MQ=255) gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCga > 5:129800/1‑65 (MQ=255) gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgac > 2:334598/1‑147 (MQ=255) tCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgaccag > 2:157968/1‑149 (MQ=255) cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATTCTTGGCGGGCTGATCAGCGACGAGTTGa < 1:231800/133‑1 (MQ=255) cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGa > 2:231800/1‑133 (MQ=255) cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgaccagcg > 7:256347/1‑149 (MQ=255) cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGCTGAGTaccagcgaccagc < 6:218423/148‑1 (MQ=255) agctggTGTCGGCAATCGACGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt > 3:371526/5‑130 (MQ=255) agctggTGTCGGCAATCGACGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt < 4:371526/126‑1 (MQ=255) gaggTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt < 8:347148/149‑1 (MQ=255) tggTGTCGGCAATCGACGACACCTGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt > 2:309605/2‑148 (MQ=255) gtgtCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGc > 6:41653/1‑148 (MQ=255) gtgtCGGCAATCGACGACACCTGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt < 1:309605/146‑1 (MQ=255) gtcgtcGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCAc > 7:383639/1‑149 (MQ=255) tcgtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACTAGCGCGAGATCAAGACCAATGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCAc < 1:157968/148‑1 (MQ=255) gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGTTCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTg < 1:334598/148‑1 (MQ=255) gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGc > 7:102459/1‑149 (MQ=255) gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGc > 7:354017/1‑149 (MQ=255) | CCCTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGC > NC_002947/1197155‑1197446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |