Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,197,304 T→C 5.2% I455I (ATT→ATC xcpQ → type II secretion pathway protein XcpQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,197,3040TC 5.2% 286.6 / 2.9 95I455I (ATT→ATCxcpQtype II secretion pathway protein XcpQ
Reads supporting (aligned to +/- strand):  ref base T (46/44);  new base C (2/3);  total (48/47)
Fisher's exact test for biased strand distribution p-value = 6.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGG  >  NC_002947/1197157‑1197450
                                                                                                                                                   |                                                                                                                                                  
cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg                                                                                                                                                   >  1:391432/1‑149 (MQ=255)
cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg                                                                                                                                                   >  1:401872/1‑149 (MQ=255)
cTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTg                                                                                                                                                   >  5:198181/1‑149 (MQ=255)
    gTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCAGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCg                                                                                                                                                <  5:247628/148‑1 (MQ=255)
     tCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCACAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGa                                                                                                                                               >  3:354569/1‑148 (MQ=255)
       aCCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGacac                                                                                                                                            <  4:332323/149‑1 (MQ=255)
          ggCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg                                                                                                                                         <  1:108762/149‑1 (MQ=255)
               cGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCACAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg                                                                                                                                     <  4:354569/148‑1 (MQ=255)
                gTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGc                                                                                                                                   >  3:41971/1‑149 (MQ=255)
                   aCGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACCGCGGGCGCCGGGACATCGCCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAg                                                                                                                                <  1:274299/149‑1 (MQ=255)
                   aCGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCa                                                                                                                                 <  7:238498/148‑1 (MQ=255)
                     gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg                                                                                                                                     <  5:185704/142‑1 (MQ=255)
                     gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCg                                                                                                                                     >  6:185704/1‑142 (MQ=255)
                     gCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGGCAATCgacgac                                                                                                                                              <  8:62506/133‑1 (MQ=255)
                       aGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg                                                                                                                                         <  8:108752/136‑1 (MQ=255)
                       aGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc                                                                                                                            <  2:391432/149‑1 (MQ=255)
                       aGAACAACGCCAACCCGTACCAGACAATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAg                                                                                                                                         >  7:108752/1‑136 (MQ=255)
                         aacaacGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc                                                                                                                            >  1:300671/1‑147 (MQ=255)
                         aacaacGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGAc                                                                                                                            <  2:300671/147‑1 (MQ=255)
                               gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGAt                                                                                                                       >  6:292309/1‑146 (MQ=255)
                               gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGAt                                                                                                                       <  5:292309/146‑1 (MQ=255)
                               gCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCAc                                                                                                                    >  7:379367/1‑149 (MQ=255)
                                    cccGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCGCGGCCAGCGACGTGCTCACccac                                                                                                                >  6:421559/1‑148 (MQ=255)
                                     ccGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac                                                                                                                >  5:218423/1‑147 (MQ=255)
                                          ccAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAgcgc                                                                                                          <  7:238750/148‑1 (MQ=255)
                                               ccATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATc                                                                                                    <  2:401872/149‑1 (MQ=255)
                                                       cgcAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCaa                                                                                            <  8:379367/149‑1 (MQ=255)
                                                        gcAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAg                                                                                           <  1:409400/149‑1 (MQ=255)
                                                          aaGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac                                                                                                                >  8:216330/1‑126 (MQ=255)
                                                          aaGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACcaac                                                                                                                <  7:216330/126‑1 (MQ=255)
                                                            ggAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCa                                                                                       >  3:33853/1‑149 (MQ=255)
                                                               aGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATgg                                                                                    <  1:195444/149‑1 (MQ=255)
                                                                gTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAg                                                                                                             >  6:337956/1‑123 (MQ=255)
                                                                gTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAg                                                                                                             <  5:337956/123‑1 (MQ=255)
                                                                     ggTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTg                                                                                                                         >  6:211244/1‑106 (MQ=255)
                                                                     ggTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTg                                                                                                                         <  5:211244/106‑1 (MQ=255)
                                                                      gTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGa                                                                             >  8:385028/1‑149 (MQ=255)
                                                                         aaGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACac                                                                          >  2:216501/1‑148 (MQ=255)
                                                                           gCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACg                                                                        >  5:69799/1‑149 (MQ=255)
                                                                             tGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGc                                                                      >  2:317844/1‑149 (MQ=255)
                                                                                gcATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTg                                                                   >  2:304491/1‑149 (MQ=255)
                                                                                 cATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTgg                                                                  <  7:385028/149‑1 (MQ=255)
                                                                                 cATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTgg                                                                  <  6:198181/149‑1 (MQ=255)
                                                                                  aTCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt                                                                 <  3:116579/149‑1 (MQ=255)
                                                                                   tCAAGCCGGAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt                                                                 <  7:159995/148‑1 (MQ=255)
                                                                                    cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGa                                                                                >  8:349903/1‑132 (MQ=255)
                                                                                    cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGa                                                                                <  7:349903/132‑1 (MQ=255)
                                                                                    cAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGt                                                                 >  8:159995/1‑147 (MQ=255)
                                                                                     aaGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGa                                                               <  5:421559/148‑1 (MQ=255)
                                                                                                cAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGt                                                                                                                          >  8:285152/1‑78 (MQ=255)
                                                                                                cAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGt                                                                                                                          <  7:285152/78‑1 (MQ=255)
                                                                                                 aaTATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCt                                                  >  7:290892/1‑149 (MQ=255)
                                                                                                    atCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCggg                                                    <  5:251222/144‑1 (MQ=255)
                                                                                                    atCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCggg                                                    >  6:251222/1‑144 (MQ=255)
                                                                                                     tCGTCAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAg                                                                               >  7:314522/1‑116 (MQ=255)
                                                                                                     tCGTCAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAg                                                                               <  8:314522/116‑1 (MQ=255)
                                                                                                     tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATAc                                                            <  7:314/135‑1 (MQ=255)
                                                                                                     tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATAc                                                            >  8:314/1‑135 (MQ=255)
                                                                                                     tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACAAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCgg                                                     <  4:107774/142‑1 (MQ=255)
                                                                                                     tCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACAAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCgg                                                     >  3:107774/1‑142 (MQ=255)
                                                                                                        acaacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGc                                           >  5:209075/1‑149 (MQ=255)
                                                                                                         caacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGcg                                          <  4:171442/149‑1 (MQ=255)
                                                                                                          aacaGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGcga                                         <  6:69799/149‑1 (MQ=255)
                                                                                                               cGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGt                                    <  8:290892/149‑1 (MQ=255)
                                                                                                                gTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt                                   <  1:304491/149‑1 (MQ=255)
                                                                                                                   ctccTGGACGATGTCCAGGAGGTGTCGTCGATTGCCGTCACAAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg                                >  2:141289/3‑149 (MQ=255)
                                                                                                                   ctccTGGACGATGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg                                >  4:35974/3‑149 (MQ=255)
                                                                                                                   cgcCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGa                                 <  1:317844/148‑1 (MQ=255)
                                                                                                                    gcCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAg                                >  1:345081/1‑148 (MQ=255)
                                                                                                                      cTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCAt                                                                                      >  6:151330/1‑92 (MQ=255)
                                                                                                                      cTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCAt                                                                                      <  5:151330/92‑1 (MQ=255)
                                                                                                                         gACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccag                          >  7:347148/1‑149 (MQ=255)
                                                                                                                            aTCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcga                       >  8:213154/1‑149 (MQ=255)
                                                                                                                            aTCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcga                       >  4:301384/1‑149 (MQ=255)
                                                                                                                             tCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgac                      <  6:209075/149‑1 (MQ=255)
                                                                                                                               gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCga                                                                                                        <  6:129800/65‑1 (MQ=255)
                                                                                                                               gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCga                                                                                                        >  5:129800/1‑65 (MQ=255)
                                                                                                                               gTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgac                      >  2:334598/1‑147 (MQ=255)
                                                                                                                                tCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgaccag                   >  2:157968/1‑149 (MQ=255)
                                                                                                                                  cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATTCTTGGCGGGCTGATCAGCGACGAGTTGa                                 <  1:231800/133‑1 (MQ=255)
                                                                                                                                  cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGa                                 >  2:231800/1‑133 (MQ=255)
                                                                                                                                  cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTaccagcgaccagcg                 >  7:256347/1‑149 (MQ=255)
                                                                                                                                  cAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGCTGAGTaccagcgaccagc                  <  6:218423/148‑1 (MQ=255)
                                                                                                                                   agctggTGTCGGCAATCGACGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt                                   >  3:371526/5‑130 (MQ=255)
                                                                                                                                   agctggTGTCGGCAATCGACGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt                                   <  4:371526/126‑1 (MQ=255)
                                                                                                                                     gaggTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt              <  8:347148/149‑1 (MQ=255)
                                                                                                                                      tggTGTCGGCAATCGACGACACCTGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt              >  2:309605/2‑148 (MQ=255)
                                                                                                                                        gtgtCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGc            >  6:41653/1‑148 (MQ=255)
                                                                                                                                        gtgtCGGCAATCGACGACACCTGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCgtgt              <  1:309605/146‑1 (MQ=255)
                                                                                                                                          gtcgtcGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCAc         >  7:383639/1‑149 (MQ=255)
                                                                                                                                           tcgtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACTAGCGCGAGATCAAGACCAATGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCAc         <  1:157968/148‑1 (MQ=255)
                                                                                                                                             gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGTTCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTg       <  1:334598/148‑1 (MQ=255)
                                                                                                                                             gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGc      >  7:102459/1‑149 (MQ=255)
                                                                                                                                             gtcgATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGc      >  7:354017/1‑149 (MQ=255)
                                                                                                                                                 aTTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCgg  <  3:35974/149‑1 (MQ=255)
                                                                                                                                                  ttGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt                                   <  8:310552/115‑1 (MQ=255)
                                                                                                                                                  ttGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGtt                                   >  7:310552/1‑115 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CTTCGTCACCGGCTCCGTGACGCAGAACAACGCCAACCCGTACCAGACCATCGAGCGCAAGGAAGTCGGGGTGAAGCTGCGCATCAAGCCGCAGATCAATATCGACAACAGCGTGCGCCTGGACATCGTCCAGGAGGTGTCGTCGATTGCCGACACCAGCTCGGCCAGCGACGTGATCACCAACAAGCGCGAGATCAAGACCAAGGTCATGGTCGAGGACAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGG  >  NC_002947/1197157‑1197450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: