| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 7.9% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 7.9% | 528.6 / 24.7 | 189 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (82/92); new base G (5/10); total (87/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 193 total aligned reads displayed.
CGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA > NC_002947/197032‑197322 | tgTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa‑a > 4:218008/2‑149 (MQ=38) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑At > 2:113325/1‑148 (MQ=21) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑At > 8:194064/1‑148 (MQ=39) aGCGTGACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCAc > 7:375543/1‑149 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCAc < 8:100217/149‑1 (MQ=39) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCAc > 6:257766/1‑149 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑At > 2:18070/1‑145 (MQ=38) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCAc > 3:347105/1‑148 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCActt < 6:343360/149‑3 (MQ=17) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTa > 1:235546/1‑149 (MQ=37) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTaca > 4:238641/1‑149 (MQ=17) agcATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCGCGAATCCGACCCCTGCTCAGACCACGATCTACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTaca < 2:346477/146‑1 (MQ=255) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTacac > 6:179048/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCGCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACAcc < 4:288949/149‑1 (MQ=12) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCg > 4:367623/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGt > 8:173329/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCAGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACACCGt > 8:242673/1‑149 (MQ=12) tCGAGAACGCCACAGGCGTTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATTCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTg < 8:291701/149‑1 (MQ=255) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGt > 7:314063/1‑148 (MQ=37) cGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGa > 4:321389/1‑149 (MQ=37) gagaACGCCACAGGCTGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGa < 4:101415/148‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGAcc < 5:295538/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGAcc < 5:234803/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGAcc > 3:162556/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGt < 8:230311/145‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCt < 2:61302/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACACCGTGACCCt < 8:121241/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACACCGTGACCCTGa < 7:242673/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACACCGTGACCCTGa < 4:19043/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACACCGTGACCCTGa < 7:217560/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGa < 4:391808/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGa < 5:13833/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCAGCCCCCGGCTCAGAACACGATAAACGAATCGGTCGATGCCACCAACGCGACCCTGAAGGCGACCCCGTCGGTCCCCGAAGGCGTCGTG‑ATAACTTACACCGTGACCCt > 8:95293/1‑147 (MQ=11) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCaa > 3:207998/1‑149 (MQ=37) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATc > 1:192404/1‑147 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCt < 1:157273/149‑1 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGCCTCACACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCt < 2:383556/149‑1 (MQ=21) gCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAg < 3:405232/142‑1 (MQ=21) ggTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCt < 1:255757/137‑1 (MQ=21) gTAATTTCGAGCAACTTACCCGCAATCGGACCCCGGCTCAGACCACTATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGcc < 2:366542/149‑1 (MQ=11) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGccc < 3:321389/149‑1 (MQ=34) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATGGTGCCCAGACGc < 4:162556/148‑1 (MQ=21) gAGCAACTGACCCCGAACCCGACCCCGGCTCAGACAACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGAGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAgccgcc > 3:235309/1‑149 (MQ=255) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 2:258543/1‑149 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:389744/149‑1 (MQ=34) aGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCACACGCCg > 4:276751/1‑149 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCAGGt > 2:171620/1‑148 (MQ=21) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCaa > 7:89063/1‑127 (MQ=35) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc > 5:7439/1‑149 (MQ=38) ccccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 3:193993/142‑1 (MQ=17) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 4:385567/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 3:385567/1‑149 (MQ=39) cGAATCCGACGCCGGCTCTGACCAGTAGCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCATTCATGCCCAGACGCCGGTAACCGTGAcc < 8:132617/149‑1 (MQ=11) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 4:199168/1‑149 (MQ=39) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 2:401548/1‑149 (MQ=37) cGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGc < 8:46400/149‑1 (MQ=34) cTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg < 7:233085/149‑1 (MQ=35) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcat < 5:265487/149‑1 (MQ=39) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtca > 6:64304/1‑148 (MQ=38) cACGATCAACGACTCGGTCGATGCCACCACGGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 1:36369/1‑149 (MQ=255) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTg > 4:155973/1‑88 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTg < 3:155973/88‑1 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGCCCCTGTCCACCGGCCAGGtcagca > 6:210759/1‑149 (MQ=255) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 5:143718/1‑149 (MQ=40) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca < 3:51028/149‑1 (MQ=40) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 1:387739/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 6:143718/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 4:73917/1‑149 (MQ=255) cAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCt > 1:410927/1‑97 (MQ=33) cAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCt < 2:410927/97‑1 (MQ=33) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTg > 5:283550/1‑147 (MQ=255) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGaa > 2:372959/1‑149 (MQ=255) cGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 7:167950/108‑1 (MQ=32) cGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 8:167950/1‑108 (MQ=32) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAGATCACCTACACCGTGACCCTGACCAATCCTGCCCAGACGCCGGTAACCGTGACCCTCACCCACGGCCAGGTCATCACTGTTGAAGCCgg > 1:117264/1‑148 (MQ=14) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa < 2:138284/149‑1 (MQ=255) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 5:188242/1‑148 (MQ=255) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTg < 3:38127/87‑1 (MQ=33) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACTGCCAGGTCATCACTGTTGAAGCCGGCAA‑AAc > 8:373102/1‑149 (MQ=255) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AAcc > 3:305463/1‑149 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtc > 2:238797/1‑118 (MQ=40) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGc > 6:325184/1‑149 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGc < 7:173329/149‑1 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 6:278979/1‑95 (MQ=37) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTc < 1:372959/149‑1 (MQ=255) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 2:220756/1‑82 (MQ=33) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTc < 7:194064/147‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCa < 5:410931/149‑1 (MQ=255) cGTCGGTCACCGAAGGCGCCGTA‑ATCACCTACACAGTGACCCTTAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCCGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGcc < 6:297048/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg < 6:401892/149‑1 (MQ=255) tCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 4:305463/149‑1 (MQ=40) cACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACg > 6:99102/1‑149 (MQ=40) cGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTcc > 1:44181/1‑128 (MQ=40) cGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTcc < 2:44181/128‑1 (MQ=40) cGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 1:80525/145‑1 (MQ=39) cGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc > 2:80525/1‑145 (MQ=39) cGAAGGCGGCGTA‑ATCACCTACACCGTGAACCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTcc > 2:206414/1‑73 (MQ=21) aaGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac < 5:325184/149‑1 (MQ=39) gcgTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAATTACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa < 1:101715/149‑1 (MQ=255) a‑aTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa > 5:388210/1‑138 (MQ=35) | CGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA > NC_002947/197032‑197322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |