| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,185 | C→T | 6.2% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,185 | 0 | C | T | 6.2% | 521.9 / 15.3 | 177 | T897T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (79/87); new base T (4/7); total (83/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
Only 100 of 178 total aligned reads displayed.
GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGAC > NC_002947/197037‑197331 | gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCAcc < 2:132591/149‑1 (MQ=38) gccACCATCGAGAACGACACAGTCGGTAATAGCGCTCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACTACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTa < 8:171193/147‑1 (MQ=11) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCGCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACA‑cc < 4:288949/149‑1 (MQ=12) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCg > 3:232268/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATACGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCg > 1:383556/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACA‑CCGt < 5:342731/149‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCAGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACA‑CCGt > 8:242673/1‑149 (MQ=12) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGt > 7:314063/1‑148 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGt > 4:158655/1‑148 (MQ=37) gagaACGCCACAGGCTGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGa < 4:101415/148‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTac > 7:205470/1‑140 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGAcc < 5:295538/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGAcc > 3:162556/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGt > 7:230311/1‑145 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGt < 8:230311/145‑1 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGAccc < 3:364535/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCt < 2:61302/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACA‑CCGTGACCCt < 8:121241/149‑1 (MQ=17) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTg < 8:18763/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTG‑ATCACTTACA‑CCGTGACCCTGa < 4:19043/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGa < 4:391808/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGa < 3:381682/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCAGCCCCCGGCTCAGAACACGATAAACGAATCGGTCGATGCCACCAACGCGACCCTGAAGGCGACCCCGTCGGTCCCCGAAGGCGTCGTG‑ATAACTTACA‑CCGTGACCCt > 8:95293/1‑147 (MQ=11) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAg > 6:114866/1‑149 (MQ=37) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGa < 4:305872/139‑1 (MQ=37) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGa > 3:305872/1‑139 (MQ=37) acaGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCaa > 2:277442/1‑149 (MQ=37) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCt < 1:157273/149‑1 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGCCTCACACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCt < 2:383556/149‑1 (MQ=21) gCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAg < 3:405232/142‑1 (MQ=21) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGGGCaggattgc > 4:30004/1‑142 (MQ=255) ggTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCt < 1:255757/137‑1 (MQ=21) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGccc < 2:379687/149‑1 (MQ=34) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGccc < 3:321389/149‑1 (MQ=34) tAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGccc < 5:257766/149‑1 (MQ=21) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGa > 3:283031/1‑135 (MQ=34) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGc < 2:142161/148‑1 (MQ=34) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGc < 4:177286/148‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:389744/149‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 2:258543/1‑149 (MQ=34) aGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCACACGCCg > 4:276751/1‑149 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCAGGt > 2:171620/1‑148 (MQ=21) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTaa < 6:178387/149‑1 (MQ=35) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCaa > 7:89063/1‑127 (MQ=35) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAca < 4:232268/147‑2 (MQ=14) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATc < 4:346731/125‑1 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 2:44158/1‑140 (MQ=34) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 4:385567/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAAAGACTCGGTCGATTCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAATGCGGCGTA‑ATCACCTACACCCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 1:44158/141‑1 (MQ=11) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATc > 8:255683/1‑125 (MQ=17) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATc < 7:255683/125‑1 (MQ=17) ccGAATCCGACCCCGGCTCAGACCACGCTCAACGCCTCGGTCGATGCCACCACCGCGACCCTGACGGCGACCCCGTCGGTCACCGAAGGCGGCGTA‑CTCACCTACA‑CCGTGACCCTGCGCAATCCTGCCCAGACGCCGCTAACCGTGAc > 5:297048/1‑149 (MQ=14) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACC‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 3:395661/1‑149 (MQ=255) cGAATCCGACGCCGGCTCTGACCAGTAGCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCATTCATGCCCAGACGCCGGTAACCGTGAcc < 8:132617/149‑1 (MQ=11) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 4:199168/1‑149 (MQ=39) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 2:401548/1‑149 (MQ=37) cGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGc < 3:183834/149‑1 (MQ=34) cGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGc < 8:46400/149‑1 (MQ=34) cTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg < 2:35883/149‑1 (MQ=35) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtca > 6:64304/1‑148 (MQ=38) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGATGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcat > 6:221626/1‑148 (MQ=255) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTg < 3:155973/88‑1 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 5:143718/1‑149 (MQ=40) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca < 3:51028/149‑1 (MQ=40) aCGATCAACGACTCGGTCGACGCCACAACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCAc < 7:177495/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 8:164540/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 6:143718/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 2:46145/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 4:73917/1‑149 (MQ=255) cGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 7:167950/108‑1 (MQ=32) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAGATCACCTACA‑CCGTGACCCTGACCAATCCTGCCCAGACGCCGGTAACCGTGACCCTCACCCACGGCCAGGTCATCACTGTTGAAGCCgg > 1:117264/1‑148 (MQ=14) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 5:188242/1‑148 (MQ=255) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTg > 4:38127/1‑87 (MQ=33) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCt > 1:368479/1‑61 (MQ=35) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCt < 2:368479/61‑1 (MQ=35) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACTGCCAGGTCATCACTGTTGAAGCCGGCAA‑AAc > 8:373102/1‑149 (MQ=255) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AAc > 6:410931/1‑149 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCa < 6:188242/148‑1 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtc > 2:238797/1‑118 (MQ=40) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtc < 1:238797/118‑1 (MQ=40) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAg > 5:401892/1‑149 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGc < 7:173329/149‑1 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGc > 6:325184/1‑149 (MQ=255) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 5:278979/95‑1 (MQ=37) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 6:278979/1‑95 (MQ=37) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGt < 3:199168/149‑1 (MQ=255) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:220756/82‑1 (MQ=33) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 2:220756/1‑82 (MQ=33) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTc < 1:401548/147‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCa < 5:64304/149‑1 (MQ=255) cGTCGGTCACCGAAGGCGCCGTA‑ATCACCTACA‑CAGTGACCCTTAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCCGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGcc < 6:297048/149‑1 (MQ=255) cACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACg > 6:99102/1‑149 (MQ=40) cGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTcc > 1:44181/1‑128 (MQ=40) cGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 1:80525/145‑1 (MQ=39) cGAAGGCGGCGTA‑ATCACCTACA‑CCGTGAACCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTcc > 2:206414/1‑73 (MQ=21) aaGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGATGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac < 5:221626/149‑1 (MQ=255) ggcggcGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa < 7:241284/149‑1 (MQ=39) gcgTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAATTACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa < 1:101715/149‑1 (MQ=255) a‑aTCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa < 6:388210/138‑1 (MQ=35) aCCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGAc > 3:119672/1‑149 (MQ=34) | GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA‑ATCACCTACA‑CCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAA‑AACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGAC > NC_002947/197037‑197331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |