| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,243,755 | T→C | 5.5% | intergenic (+44/+55) | tsaA → / ← rnt | peroxiredoxin/ribonuclease T |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,243,755 | 0 | T | C | 5.5% | 265.1 / 3.9 | 90 | intergenic (+44/+55) | tsaA/rnt | peroxiredoxin/ribonuclease T |
| Reads supporting (aligned to +/- strand): ref base T (40/45); new base C (2/3); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.74e-01 | |||||||||||
ACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGTTTTCTCGGTGTCATAACGT > NC_002947/1243608‑1243900 | aCGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTa < 1:109116/149‑1 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTAt < 8:106882/149‑1 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTAt < 6:156043/149‑1 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTAt > 1:56989/1‑149 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTCGCCGGTTTTTTTAt < 7:351708/149‑1 (MQ=255) ggCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATg > 5:298512/1‑149 (MQ=255) ggCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATg > 2:328185/1‑149 (MQ=255) cGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGcc > 5:409807/1‑149 (MQ=255) cGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAACGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGACCCAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCACGAAGGCCGGTTTTTTCATGca < 5:267898/149‑2 (MQ=38) gtgtGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGAATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTcc > 6:268094/1‑149 (MQ=255) tgtgCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑t < 8:213474/149‑1 (MQ=255) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCAt > 1:137746/1‑137 (MQ=38) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCAt > 1:142442/1‑137 (MQ=38) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCAt < 2:142442/137‑1 (MQ=38) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCAt < 2:137746/137‑1 (MQ=38) cTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCg < 7:111809/149‑1 (MQ=255) gaaCTGGAAAAAAGGCGTCAAGGGCATGATCGCTTCGCCGGATGGCGTTGCTGCCTACCTGTGTGAGAACTCTGGCTAGCTGTATTTGGTGCGTGCTTCATTAACCCGTCCTTCTTGGCCGGTTTTTTTATGCCTTCG‑TGTGCCGGCct < 4:258930/148‑1 (MQ=255) aCTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCctct > 6:94987/1‑149 (MQ=255) tGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTc > 2:54080/1‑149 (MQ=255) aaaaaaGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTcgcg > 3:284148/1‑149 (MQ=255) aaaaaGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCgg > 1:74431/1‑149 (MQ=255) aaaaGGCGACAAGGGCATGAAAGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCggg > 4:266018/1‑149 (MQ=255) aGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGgcgc < 5:268094/149‑1 (MQ=255) gCGACAACGGCATGAACGCTTCGCCCGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGgcgcgc < 2:18784/149‑1 (MQ=255) gACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGccc > 5:416653/1‑149 (MQ=255) cAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGgcgcgc < 3:172321/145‑1 (MQ=255) cAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGATGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGgcgcgc > 4:172321/1‑145 (MQ=255) gggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGaa < 5:94987/149‑1 (MQ=255) gCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATg > 5:351783/1‑149 (MQ=255) gCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATg > 4:293268/1‑149 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGc < 2:56989/149‑1 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTAACTGAGCGACAACGCGGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTTGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATg < 1:54080/149‑1 (MQ=255) gAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCtt > 6:320222/1‑149 (MQ=255) aacccgtCGCCTGAAGGCGTTGCTGCCTACCTGAGCGACAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCttt < 7:254784/143‑1 (MQ=255) gCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGc < 8:35172/149‑1 (MQ=255) gCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATc < 6:409807/149‑1 (MQ=255) gCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATc < 3:293268/149‑1 (MQ=255) gCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCGTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGtt > 5:424375/1‑148 (MQ=255) gTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAAt < 6:172553/125‑1 (MQ=255) gTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAAt > 5:172553/1‑125 (MQ=255) ctgcCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATc < 8:387028/148‑1 (MQ=255) ccTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCgcgc > 1:208055/1‑149 (MQ=255) ccTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCgcgc < 2:74431/149‑1 (MQ=255) tACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCgcgc > 3:295148/1‑147 (MQ=255) cTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAgcc > 2:234462/1‑149 (MQ=255) tGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCa < 2:19451/122‑1 (MQ=255) tGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAgccg > 3:113976/1‑149 (MQ=255) cGAGAACGCTGGCAAGCTGTAATTGCTGTGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCa > 5:138761/1‑149 (MQ=255) cGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCa < 1:234462/149‑1 (MQ=255) gagaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAt < 6:416653/149‑1 (MQ=255) gagaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAt > 8:232038/1‑149 (MQ=255) gagaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCACCCAt > 6:316934/1‑149 (MQ=255) agaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTATAAGATAAATCGTTGAAATCGCTCCAGCCCGCCAtt > 8:304971/1‑149 (MQ=255) agaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtt < 6:424375/149‑1 (MQ=255) agaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtt > 7:97910/1‑149 (MQ=255) gaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAttt < 7:232038/149‑1 (MQ=255) aCGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttct < 4:295148/149‑1 (MQ=255) cTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctttc < 4:113976/149‑1 (MQ=255) cTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCACCCAtttctttc < 5:316934/149‑1 (MQ=255) tGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGc < 1:352423/101‑1 (MQ=255) tGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGc > 2:352423/1‑101 (MQ=255) gCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCa < 5:320222/148‑1 (MQ=255) cTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGAGCCAGCCGCCCATTTCTTTCCAGCGGtt < 6:351783/149‑1 (MQ=255) tGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt > 2:192479/1‑148 (MQ=255) gTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGa > 6:7308/1‑149 (MQ=255) tAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGAc > 6:172256/1‑149 (MQ=255) aTTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGccc < 3:172363/81‑1 (MQ=255) aTTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGccc > 4:172363/1‑81 (MQ=255) ctgcTTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGc < 7:304971/148‑1 (MQ=255) ctgcGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAAt > 8:163364/1‑100 (MQ=255) ctgcGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAAt < 7:163364/100‑1 (MQ=255) cGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCg < 5:172256/147‑1 (MQ=255) cGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCa < 2:208055/149‑1 (MQ=255) cATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAAc < 6:138761/149‑1 (MQ=255) aTGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctt > 1:161028/1‑122 (MQ=255) gAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctt > 6:20454/1‑120 (MQ=255) gAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctt < 5:20454/120‑1 (MQ=255) gAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGc > 5:306627/1‑149 (MQ=255) gAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCG‑ACGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCAGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGc > 2:81321/1‑148 (MQ=255) aaaaaaCCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctttc < 5:129393/121‑1 (MQ=255) aaaaaaCCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCAtttctttc > 6:129393/1‑121 (MQ=255) aaaaaaCCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt > 5:137954/1‑129 (MQ=255) aaaaaaCCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt < 6:137954/129‑1 (MQ=255) aaaaaCCGGCCACGAAGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCt > 2:279232/1‑148 (MQ=255) ggCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGtt < 8:97910/149‑1 (MQ=255) ggCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGtt < 5:7308/149‑1 (MQ=255) ttCGTGTCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTGTTCGCGGGCGCGCCCGCGAATGCCTTTTGCAGATCAATCGTTGAAATCGCTCCAGCCTCCCATTTCTTTCCAGCGGTTGACGATGCCg < 4:126074/127‑1 (MQ=255) ttCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCAGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCAAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCg > 3:126074/1‑127 (MQ=255) gTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGTTTTCTCg < 6:306627/148‑1 (MQ=255) gTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGTTTTCTCg < 4:284148/148‑1 (MQ=255) ttttttATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATg > 8:153926/1‑112 (MQ=255) ttttttATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATg < 7:153926/112‑1 (MQ=255) ttttATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGTTTTCTCGGTGTCATAACGt > 6:185740/1‑149 (MQ=255) | ACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCC‑TGTGCCGGCCTCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAGCGGTTTTCTCGGTGTCATAACGT > NC_002947/1243608‑1243900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |