| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,248,217 | G→A | 6.1% | intergenic (+30/+38) | argG → / ← PP_1089 | argininosuccinate synthase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,248,217 | 0 | G | A | 6.1% | 253.6 / 3.6 | 83 | intergenic (+30/+38) | argG/PP_1089 | argininosuccinate synthase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (40/37); new base A (3/2); total (44/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.97e-01 | |||||||||||
TTTGAAGAAGATGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTCGGGCGGTTG > NC_002947/1248080‑1248365 | tttGAAGAAGATGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGAATGCGCATTGCCCCCAACAAGCGCCGTTCGCTGCTCTGATTGCTGGAGTGTGCCAAAACCCCGGATCGGTCCGGGGtttt > 5:261205/1‑149 (MQ=255) tGAAGAAGATGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGACCGAGCCGGGGttttc < 6:111514/148‑2 (MQ=255) agaagaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCACTGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGACCGAGCCGGGGttttcgcac < 7:42901/149‑6 (MQ=255) aagaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGc < 1:68120/149‑1 (MQ=255) gaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGtttt‑ttt > 3:181609/1‑143 (MQ=255) gaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGtttt‑ttt < 4:181609/143‑1 (MQ=255) gaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGtttt < 6:327355/140‑1 (MQ=255) gaTGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGtttt > 5:327355/1‑140 (MQ=255) gCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAgg > 6:36737/1‑149 (MQ=255) ccTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGc > 6:260976/1‑149 (MQ=255) cAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCggg < 2:236865/148‑1 (MQ=255) aaCCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTc < 6:183907/149‑1 (MQ=255) aaCCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTc < 4:57173/149‑1 (MQ=255) gCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTTCGTATTCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCaa < 2:131996/149‑1 (MQ=255) gATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACtt < 5:36737/149‑1 (MQ=255) ctgctgGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCgg < 7:160698/148‑1 (MQ=255) ctgctgGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGCCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCgg < 7:196471/148‑1 (MQ=255) ctactgGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGt < 3:347683/146‑1 (MQ=255) ctgGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGc > 1:202440/1‑149 (MQ=255) gCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTg < 3:14983/144‑1 (MQ=255) gCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTg > 4:14983/1‑144 (MQ=255) gCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTca > 4:317822/1‑149 (MQ=255) ttCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTc > 8:13688/1‑132 (MQ=255) ttCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTcaca > 4:329990/1‑149 (MQ=255) atcaAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCAcatca > 3:124190/1‑149 (MQ=255) tcaAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCAcatcat > 4:159043/1‑149 (MQ=255) caAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACatcatc > 7:191093/1‑149 (MQ=255) aGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGt < 2:29294/134‑1 (MQ=255) aGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGt > 1:29294/1‑134 (MQ=255) cTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGccc < 8:18183/149‑1 (MQ=255) cTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TATATGCCAGCGCAAAGGCGGCTCCTTCAACTTCGGTGGCTCACATCATCGccc > 4:97383/1‑149 (MQ=255) aaTGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCAcatc > 2:387688/1‑139 (MQ=255) aaTGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCAcatc < 1:387688/139‑1 (MQ=255) aaTGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTc > 4:103497/1‑148 (MQ=255) gCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGt > 6:133343/1‑149 (MQ=255) gtGCGTATGGGGATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTTGCGTGTGCGAAAACCGCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCTAAGGCGGTTCGTTCAACTTCGGTGGCTCAGATCATCGCCCTCGAGTgcg < 6:261205/148‑1 (MQ=255) cTGCGTATGCGCATTGCCGCCAACAAGGGCCGGTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTgcg < 6:163764/149‑1 (MQ=255) cGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTcac > 3:208455/1‑127 (MQ=255) cGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTcac < 4:208455/127‑1 (MQ=255) cgcATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGAt > 7:253893/1‑145 (MQ=255) cgcATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGAt < 8:253893/145‑1 (MQ=255) cgcATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGAt < 8:259019/145‑1 (MQ=255) cgcATTGCCGCCAACAAGGGCCGTACGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGAt > 7:259019/1‑145 (MQ=255) ccgccAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCCCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTgcg > 8:315030/1‑149 (MQ=255) cgccAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTgcg > 8:17431/1‑148 (MQ=255) gccAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGca < 4:124190/149‑1 (MQ=255) aGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGAc < 7:17431/149‑1 (MQ=255) aGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGAc < 2:123158/149‑1 (MQ=255) ggCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACtt > 4:249553/1‑92 (MQ=255) ggCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACtt < 3:249553/92‑1 (MQ=255) ccGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCt > 1:68023/1‑149 (MQ=255) gTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGt < 3:329990/149‑1 (MQ=255) ttCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTc > 2:294519/1‑149 (MQ=255) gctgctCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAg < 8:191093/149‑1 (MQ=255) ctctGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGAt < 5:133343/147‑1 (MQ=255) tGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACa > 7:82197/1‑148 (MQ=255) aTTGCTGGCGTGTGCGAAAACCCCGGCCCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACaaaa < 7:315030/149‑1 (MQ=255) ttGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACaaaa < 3:97383/148‑1 (MQ=255) gCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAg < 4:405912/149‑1 (MQ=255) gtgCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGAcgc > 6:102112/1‑149 (MQ=255) ataaaaaagCCCCGGACCGAGCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGAcgc > 2:339563/6‑149 (MQ=255) aaaaaaaCCCCGGACCGCGCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGAGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGAcgcgc > 1:122973/4‑149 (MQ=255) cGAAAACCCCGGCTCGGTCCGGGGTTTTGTTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACatcatc > 1:232186/1‑79 (MQ=255) cGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACatcatc < 2:232186/78‑1 (MQ=255) cGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATAGACGTCTGTCCAGATTACAAACGCGCCAGAcgcgcc > 6:406994/1‑148 (MQ=255) aaaaaaCCCCGGACCGAGCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGAcgcgcg > 3:404142/3‑149 (MQ=255) gAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAg > 2:181559/1‑141 (MQ=255) gAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAg < 1:181559/141‑1 (MQ=255) gAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACgcgcgc > 4:325574/1‑149 (MQ=255) aaaaaCCCCGGACCGAGCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACgcgcgc > 3:311530/2‑149 (MQ=255) aaaCCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTg > 7:383699/1‑149 (MQ=255) aCCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGc > 6:298436/1‑149 (MQ=255) ccccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTGAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGa < 5:313483/137‑1 (MQ=255) ccccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGa > 6:313483/1‑137 (MQ=255) cccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGt > 4:134006/1‑44 (MQ=255) cccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGt < 3:134006/44‑1 (MQ=255) cccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGAtt < 6:38124/122‑1 (MQ=255) cccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGAtt > 5:38124/1‑122 (MQ=255) cccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTc > 2:21992/1‑149 (MQ=255) ccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACaa < 5:426412/125‑1 (MQ=255) ccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACaa > 6:426412/1‑125 (MQ=255) ccGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAATCGCCAGACGCGCGCTGGCTCg > 4:307403/1‑149 (MQ=255) ggCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTCggg < 2:202440/149‑1 (MQ=255) gTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGcc < 2:346124/124‑1 (MQ=255) gTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTCGGGCGGTTg < 3:103497/149‑1 (MQ=255) gTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGGCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTCGGGCGGTTg < 5:406994/149‑1 (MQ=255) | TTTGAAGAAGATGGTGGTGCCTACAACCAGGCAGATGCTGCTGGCTTCATCAAGCTCAATGCACTGCGTATGCGCATTGCCGCCAACAAGGGCCGTTCGCTGCTCTGATTGCTGGCGTGTGCGAAAACCCCGGCTCGGTCCGGGGTTTT‑TTTATGCCCGCGCAAAGGCGGGTCGTTCAACTTCGGTGGCTCACATCATCGCCCTCGAGTGCGCTGATCGAAAGCTGCGCACATTGACGTCTGTCCAGATTACAAAAGCGCCAGACGCGCGCTGGCTCGGGCGGTTG > NC_002947/1248080‑1248365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |