| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,327,121 | C→T | 55.0% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 55.0% | 20.0 / 190.2 | 149 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (36/31); new base T (41/41); total (77/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 149 total aligned reads displayed.
AGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGT > NC_002947/1326975‑1327227 | aGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTAt < 5:234290/149‑1 (MQ=17) gTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGaa > 2:152279/1‑149 (MQ=32) aCAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATTAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATg < 3:183436/148‑1 (MQ=17) aCAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGt < 5:106436/149‑1 (MQ=17) aCAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGt > 6:316619/1‑149 (MQ=17) aCAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCATGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATg < 3:283526/148‑1 (MQ=17) ggTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAt < 1:321296/149‑1 (MQ=32) gCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGTTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTc < 5:316811/148‑1 (MQ=17) cGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTgg > 5:21186/1‑149 (MQ=32) gTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGc > 8:211067/1‑149 (MQ=32) ggggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCttt > 7:363256/1‑149 (MQ=17) gggAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCGTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCtttt < 5:739/149‑1 (MQ=17) cTGCGACTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCttt < 6:236482/142‑1 (MQ=17) cTGCGACTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCttt > 5:236482/1‑142 (MQ=17) tGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGa > 8:167564/1‑148 (MQ=17) cTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTc < 5:103804/149‑1 (MQ=32) tGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCTGATCGTTCt > 7:306740/1‑149 (MQ=17) gATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCt < 5:296745/147‑1 (MQ=32) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTaa < 5:316619/149‑1 (MQ=17) cACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGt > 1:148306/1‑133 (MQ=32) cctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCttt > 4:368570/1‑144 (MQ=17) cctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCttt < 3:368570/144‑1 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAAt > 8:295728/1‑149 (MQ=32) tcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAt < 5:354511/116‑1 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTTTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc < 8:153211/148‑1 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCg > 3:33570/1‑149 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc > 7:181625/1‑148 (MQ=32) ctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTCTCAGATCGTTCTTTAAAAATTc < 7:261217/148‑1 (MQ=17) ttAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCg > 1:213743/1‑148 (MQ=32) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCgg < 8:285206/147‑1 (MQ=17) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCgg < 2:362515/147‑1 (MQ=32) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgt > 3:40256/1‑149 (MQ=17) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgt < 4:33570/149‑1 (MQ=17) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTg < 2:404523/112‑1 (MQ=32) acgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgtg > 7:91236/1‑149 (MQ=17) cgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga < 2:38118/149‑1 (MQ=17) cgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga < 2:139257/149‑1 (MQ=17) gacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgat < 4:129896/149‑1 (MQ=17) tcATCAGCAGGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 6:187865/2‑147 (MQ=12) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatag < 2:213743/149‑1 (MQ=32) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 4:244434/1‑146 (MQ=32) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑CCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTTAGATCGTTCTTTTAAAATTCGGatat < 1:12484/142‑1 (MQ=12) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑CCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTGAAAATTCGGatat > 2:12484/1‑142 (MQ=17) aTCAGCCTGCTGATGACCACCCACACGAATAGCTAGATTCATTGTCGAACACGTTTATCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 1:399738/1‑145 (MQ=11) cAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCTGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGat > 5:55137/1‑137 (MQ=17) aGCCTGCTGATGAGCTCCGACACGAATTGCTTGATTCATTGTCGAGGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGatat < 6:93994/149‑1 (MQ=12) aGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCGTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTATAGTCAGATCGATCTTTAAAAATTGGGATATGTgatagata > 8:344371/1‑148 (MQ=11) aGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatagata > 5:40986/1‑148 (MQ=17) aGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGatat < 4:40256/149‑1 (MQ=17) aGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGatat < 6:59785/149‑1 (MQ=32) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtg < 2:393654/137‑1 (MQ=17) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtg > 1:393654/1‑137 (MQ=17) ctgctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTTGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGa < 5:307069/149‑1 (MQ=17) tgctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGATAGTGAGGCTTTTGTGAGATCGTTCTTTAAAAATTAGGATATTTGATAGATATAg > 1:132041/1‑148 (MQ=11) gctgATGAGCTCCCACACGAATTGCTTGGTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACt < 4:395132/149‑1 (MQ=17) gctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCtt > 6:407390/1‑118 (MQ=17) gctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCtt < 5:407390/118‑1 (MQ=17) ctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTg < 1:152279/149‑1 (MQ=32) tgatgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCtttt > 2:229105/1‑102 (MQ=17) tgatgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCtttt < 1:229105/102‑1 (MQ=17) gatgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTaa > 7:116679/1‑118 (MQ=17) gatgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTaa < 8:116679/118‑1 (MQ=17) gaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGa > 3:73302/1‑124 (MQ=17) gCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGa < 7:216498/122‑1 (MQ=32) gCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGa > 8:216498/1‑122 (MQ=32) gCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAacac > 4:113087/1‑147 (MQ=32) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAAAACCAGt > 4:245084/1‑149 (MQ=17) ccACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGtt > 8:376748/1‑148 (MQ=32) acacGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa > 6:384937/1‑149 (MQ=17) gAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc > 6:269624/1‑149 (MQ=32) aaTTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgct < 1:67627/149‑1 (MQ=17) aTTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtg > 8:328761/1‑114 (MQ=17) ttGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtgg > 2:152151/1‑149 (MQ=17) gCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggt < 7:295728/148‑1 (MQ=32) cTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 7:206089/1‑148 (MQ=17) ttGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGAtata > 7:12258/1‑120 (MQ=32) tGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCAGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGa > 3:306208/1‑148 (MQ=17) tGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTg > 4:342019/1‑124 (MQ=32) gATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGCTAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 6:47082/1‑148 (MQ=17) aTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 4:45878/1‑147 (MQ=32) ttCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGGAATTCTTATCGATTGTTGAT‑TTCTGGATTTTGTAAGATCTTTCTTTAAAAATTc > 1:286632/1‑99 (MQ=11) ttCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc < 2:286632/98‑1 (MQ=18) ttCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAg > 6:352351/1‑149 (MQ=32) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 1:115580/148‑1 (MQ=17) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGAAAGATTTATACTGAACACAAGTTTCAATGCTGGTTGATCAGGc > 3:226072/1‑149 (MQ=11) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 6:209833/140‑1 (MQ=17) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 7:368659/1‑140 (MQ=17) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 8:368659/140‑1 (MQ=17) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 5:209833/1‑140 (MQ=17) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActg < 3:79663/134‑1 (MQ=32) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActg > 4:79663/1‑134 (MQ=32) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGc > 5:371481/1‑148 (MQ=32) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGc > 3:54011/1‑148 (MQ=32) tCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 6:40986/148‑1 (MQ=17) tCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 2:254237/148‑1 (MQ=32) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 4:61220/1‑99 (MQ=14) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa < 4:360792/125‑1 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGTATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa > 3:360792/1‑125 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGt > 3:111610/1‑148 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑GTCTGGATTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 2:103192/1‑99 (MQ=9) | AGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGA‑GCATTCGCATCGAATGTTGAT‑TTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGT > NC_002947/1326975‑1327227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |