| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,436,591 | G→T | 5.5% | P158H (CCC→CAC) | PP_1257 ← | 1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,436,591 | 0 | G | T | 5.5% | 237.1 / 3.2 | 72 | P158H (CCC→CAC) | PP_1257 | 1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase |
| Reads supporting (aligned to +/- strand): ref base G (31/37); new base T (2/2); total (33/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01 | |||||||||||
CCGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTGGGCGATCAGCGAAG > NC_002947/1436444‑1436729 | ccGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTggg < 7:297513/149‑1 (MQ=255) cGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTgggg < 5:395555/149‑1 (MQ=255) tGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTggg < 2:257532/145‑1 (MQ=255) tGGCGTTGCAGTTGACGAAGCCATGCACCACCAGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTggg > 1:257532/1‑145 (MQ=255) gCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACt < 1:252473/148‑1 (MQ=255) ttGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCt < 2:325186/149‑1 (MQ=255) ttGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACAATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAAGTCCTTGAAGCCGATCAGGTTGGGGAACTGGCt > 4:963/1‑149 (MQ=255) gCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTgg > 8:16197/1‑137 (MQ=255) gCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTgg < 7:16197/137‑1 (MQ=255) gTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTgcg > 3:335272/1‑147 (MQ=255) gAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCg > 7:8185/1‑148 (MQ=255) gAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCAACGCCAAACTCCTTGAAGCCGATCAGATTGGGGAACTGGCTGCGCAGTTCg > 5:83477/1‑148 (MQ=255) aaGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCgaa < 3:160774/149‑1 (MQ=255) aaGCCATGCACCACCGGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCgaa < 8:137653/149‑1 (MQ=255) cATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAAt < 7:375794/149‑1 (MQ=255) atccaccacCTCCGTCTCCACACCGACCAACAGGGAGACAT‑CGTCATCCTTGGAGGTGAACTGCTCGGCGGCGTACCGCAAGTCGGCGCCACCGCCAAACACGTTGAACCCGATCACCTTGGGGAACTCGCTGCGCAGTTCgaagaa > 3:408345/4‑147 (MQ=255) caccacCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGTGGAACTGGCTGCGCAGTTCGAAGAATAGGt > 6:257195/1‑149 (MQ=255) accaccTGGGTGTCGACACCGACCATCAGGGTGACATACGTCATCCTTGGAGGTGATGTGCTCGGCCGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGt > 1:279884/1‑149 (MQ=255) ccaccTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCg > 3:48019/1‑149 (MQ=255) tGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGgcgc > 4:99490/1‑148 (MQ=255) gggTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGgcgc > 2:300429/1‑147 (MQ=255) gttgtCGAGACGGACCATCAGGGTGACAT‑CGTCATCGTTGGAGGTGTTGTGCTCGGCGGCGTAGCGCAAGTGGGCGGGACGGCCTATCTCCTTGAAGGCGATGAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGGGCGa < 4:408345/146‑1 (MQ=255) ggTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAg < 8:321254/149‑1 (MQ=255) gtgtCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGt > 8:33348/1‑149 (MQ=255) gtCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTgg > 6:357677/1‑149 (MQ=255) tCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTgg > 6:281049/1‑148 (MQ=255) gACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCaa < 3:99490/149‑1 (MQ=255) acacCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCaaa < 7:33348/149‑1 (MQ=255) acacCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCa > 2:341573/1‑147 (MQ=255) cGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCg < 8:8185/149‑1 (MQ=255) gACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCgt < 5:174749/149‑1 (MQ=255) aCCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCgta < 4:395280/149‑1 (MQ=255) tCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCgtagt > 1:115637/1‑147 (MQ=255) aGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAgg < 7:363148/149‑1 (MQ=255) ggTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGc < 5:148519/149‑1 (MQ=255) ccggct‑CGTCATGCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtg < 8:177426/144‑1 (MQ=255) aCAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtgt < 5:357677/148‑1 (MQ=255) aT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtgttgt < 5:7036/149‑1 (MQ=255) aT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtgttgt < 1:300429/149‑1 (MQ=255) aT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtgttgt < 2:115637/149‑1 (MQ=255) aT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCtgttg > 3:140155/1‑148 (MQ=255) gTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGTGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGa < 5:257195/149‑1 (MQ=255) gTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGa < 4:140155/149‑1 (MQ=255) tCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTaa < 4:127879/132‑1 (MQ=255) tCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCAc > 7:187868/1‑149 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTgg > 8:163793/1‑73 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTgg < 7:163793/73‑1 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCg < 4:308137/123‑1 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCg > 3:308137/1‑123 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCa > 5:279434/1‑145 (MQ=255) ttGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCa < 6:279434/145‑1 (MQ=255) ggAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCAccgcc < 2:386001/148‑1 (MQ=255) aTGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGttt > 8:318749/1‑149 (MQ=255) tgCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCg < 4:144746/148‑1 (MQ=255) tgCTCGGCCGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCgg < 2:279884/149‑1 (MQ=255) cTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGt < 8:187868/148‑1 (MQ=255) cTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTg > 4:71425/1‑149 (MQ=255) cTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTg < 3:71425/149‑1 (MQ=255) tCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGc > 3:275359/1‑149 (MQ=255) ggcggcGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGc < 7:7096/147‑1 (MQ=255) gcgcAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGgcgc > 1:71829/1‑83 (MQ=255) gcgcAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGgcgc < 2:71829/83‑1 (MQ=255) gcgcAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAgg < 3:23419/148‑1 (MQ=255) ggCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCa < 3:73074/119‑1 (MQ=255) ggCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCa > 4:73074/1‑119 (MQ=255) aCCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGt > 3:20319/1‑149 (MQ=255) aCCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGt > 3:253136/1‑149 (MQ=255) cAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGttt < 5:386499/112‑1 (MQ=255) cAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGttt > 6:386499/1‑112 (MQ=255) cAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTc < 5:284597/149‑1 (MQ=255) aaaCTCCTTGAAGCCGATCAGGTTGTGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAgg > 4:404016/1‑84 (MQ=255) aaaCTCCTTGAAGCCGATCAGGTTGTGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAgg < 3:404016/84‑1 (MQ=255) aaaCTCCTTGAAGCCGATCAGGTTGGGGAAGTGGGTGGGCGGTGGGAAGAATTGGGGGGGGCGAGTGGCAAGGCGGTAGTAAGGGGGGTGGTAGATCCCCGCCGGCAGTTGCGGTGCGGCGGCGAGGATGGCGGAGAAATGGTggtggt > 2:117226/1‑144 (MQ=255) aaaCTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCt > 4:67809/1‑149 (MQ=255) aCTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCTTATCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTgg < 1:341573/149‑1 (MQ=255) cTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTggg < 7:318749/149‑1 (MQ=255) gATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTGGGCGATCAGCGAAg > 8:215179/1‑149 (MQ=255) aTCAGGTTGGGGGACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTGGGCGATCAGCGAAg > 6:275526/1‑148 (MQ=255) ggTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTgg < 8:272872/131‑1 (MQ=255) ggTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTgg > 7:272872/1‑131 (MQ=255) | CCGGTGGCGTTGCAGTTGACGAAGCCATGCACCACCTGGGTGTCGACACCGACCATCAGGGTGACAT‑CGTCATCCTTGGAGGTGATGTGCTCGGCGGCGTAGCGCAAGTCGGCGCCACCGCCAAACTCCTTGAAGCCGATCAGGTTGGGGAACTGGCTGCGCAGTTCGAAGAATAGGTCGGCGCGAGTGGCAAAGCCGTAGTAAGGGCTGTTGTAGATCACCGCCGGCAGTTTCGGTGCGGCAGCGAGGATGGCCGAGAAATGGTGCTTCTGGGCGATCAGCGAAG > NC_002947/1436444‑1436729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |