| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,637,326 | A→T | 5.7% | intergenic (+35/+31) | pdxJ → / ← PP_1437 | pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,637,326 | 0 | A | T | 5.7% | 270.1 / 4.6 | 88 | intergenic (+35/+31) | pdxJ/PP_1437 | pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (40/43); new base T (2/3); total (42/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.78e-01 | |||||||||||
AGGGTATCAATGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGCCAACCCCAACCCGGT > NC_002947/1637179‑1637473 | aGGGTATCAATGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAg > 8:248915/1‑149 (MQ=255)aGGGTATCAATGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGATGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAg > 7:372559/1‑149 (MQ=255) ggTATCAATGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑cc > 6:338845/1‑149 (MQ=255) aaTGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCcgcg > 1:210664/1‑147 (MQ=255) aGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCATCGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TCTTCGCGGGCTTG‑CCCGCGAaaag < 1:336413/148‑1 (MQ=255) aGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAagag < 5:168879/148‑1 (MQ=255) ttGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGcc < 1:50625/149‑1 (MQ=255) ttGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGc > 4:357473/1‑148 (MQ=255) gAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCa < 8:372559/148‑1 (MQ=255) gAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCa < 4:162886/148‑1 (MQ=255) gAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTCATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAg > 1:334658/1‑149 (MQ=255) aaCATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAg > 6:198150/1‑148 (MQ=255) aCATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGc < 6:74471/148‑1 (MQ=255) cATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCa > 3:25098/1‑145 (MQ=255) cATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCa < 4:25098/145‑1 (MQ=255) cATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGcac > 3:308864/1‑149 (MQ=255) aTTGGCCATGCGCTGGTGGCGCATGACTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCCCGAAGAGGCCAGca > 1:404148/1‑147 (MQ=255) ttGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAg < 8:137606/149‑1 (MQ=255) gCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAggcg > 3:205687/1‑149 (MQ=255) gCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGCCGCCTGTGCTGGCC‑TCTTCGCGGGCTTG‑CCCGCGAAAAGGCCGGTACAg < 8:347573/146‑1 (MQ=37) gCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGCCGCCTGTGCTGGCC‑TCTTCGCGGGCTTG‑CCCGCGAAAAGGCCGGTACAg > 7:347573/1‑146 (MQ=37) cgcTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGa < 5:198150/148‑1 (MQ=255) gcTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATCGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATc < 4:356993/149‑1 (MQ=255) tggtggCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCcgc > 3:297569/1‑121 (MQ=255) tggtggCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCcgc < 4:297569/121‑1 (MQ=255) tggtggCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGAGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCAc > 6:354576/1‑149 (MQ=255) gtggCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCCTTTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCa < 1:296889/147‑1 (MQ=255) cgcATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCa < 7:248915/149‑1 (MQ=255) cgcATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCa < 3:357473/149‑1 (MQ=255) gcATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAGCCCCGCGAAGAGGCCAGCACAGGCGGccaacaa < 1:251085/142‑6 (MQ=255) gcATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGccaacaa > 2:251085/1‑136 (MQ=255) tgtCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAgg < 6:302535/148‑1 (MQ=255) ggCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTaaa > 1:202290/1‑149 (MQ=255) ggCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTaaa > 5:260498/1‑149 (MQ=255) ggCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTaaa > 8:227461/1‑149 (MQ=255) cTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAAcc > 2:174850/1‑149 (MQ=255) ttCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAgg < 6:152170/141‑1 (MQ=255) ttCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAgg > 5:152170/1‑141 (MQ=255) cAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCgg < 5:338845/148‑1 (MQ=255) ggCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAg > 8:234174/1‑149 (MQ=255) gctgctGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAgg > 3:339627/1‑149 (MQ=255) gCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGt > 3:185777/1‑137 (MQ=255) gCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGt < 4:185777/137‑1 (MQ=255) cGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAggggg > 5:1869/1‑148 (MQ=255) cGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGc < 4:308864/149‑1 (MQ=255) cGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGc < 1:174850/149‑1 (MQ=255) gaTGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAgggg < 8:98903/144‑1 (MQ=255) gaTGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAgggg > 7:98903/1‑144 (MQ=255) tGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAgctg < 6:260498/149‑1 (MQ=255) aaGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAgctgct < 8:321563/149‑1 (MQ=255) aaGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAgctgct < 7:227461/149‑1 (MQ=255) aGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGctgctg < 2:64785/149‑1 (MQ=255) ggCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGa < 4:339627/149‑1 (MQ=255) gcTGATCGTGGCGGCTTCGCGCTGTTTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGGGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCt < 4:282170/149‑1 (MQ=255) tGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTc > 7:237624/1‑148 (MQ=255) tGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCg > 1:368636/1‑149 (MQ=255) gTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGAccc < 2:202290/148‑1 (MQ=255) gcggcTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGAcccgccc > 6:225732/1‑149 (MQ=255) cTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCcgcccgcc < 4:93072/148‑1 (MQ=255) cTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCcgcccgcc > 3:93072/1‑148 (MQ=255) cgcgCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCAt < 5:354576/147‑1 (MQ=255) gcgcTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAgctg < 4:44438/124‑1 (MQ=255) gcgcTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAgctg > 3:44438/1‑124 (MQ=255) aTTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCa < 7:234174/149‑1 (MQ=255) tgttgGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCCCCATGCAACTGCAt > 2:401159/1‑148 (MQ=255) gttgGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGt < 6:247218/96‑1 (MQ=255) gttgGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGt > 5:247218/1‑96 (MQ=255) ggTCGCCTGTACCTGCC‑TTTTCGGGGGCAAG‑CCGGCGAAGAGGCCAGCCCAGGGGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATc < 2:404148/148‑1 (MQ=255) ggTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCaa > 6:93939/1‑138 (MQ=255) ggTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCaa < 5:93939/138‑1 (MQ=255) ggTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATc < 6:1869/148‑1 (MQ=255) gTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATc > 2:317427/1‑147 (MQ=255) gTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATc < 1:317427/147‑1 (MQ=255) gTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGa > 4:127295/1‑149 (MQ=255) tgtgctggCC‑TCTTCGCGGGCTTG‑CCCGCGAAAAGGCCGGTACAGGCGACCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCg > 1:391102/7‑142 (MQ=25) tgtgctggCC‑TCTTCGCGGGCTTG‑CCCGCGAAAAGGCCGGTACAGGCGACCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCg < 2:391102/136‑1 (MQ=25) ccGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATc < 5:127533/149‑1 (MQ=255) cGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTg < 4:100452/129‑1 (MQ=255) cGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTg > 3:100452/1‑129 (MQ=255) cGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCg > 1:50062/1‑149 (MQ=255) cGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCg < 4:377462/149‑1 (MQ=255) cGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCg > 6:378119/1‑149 (MQ=255) c‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATAATCggcat > 8:296426/1‑133 (MQ=255) tttCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGccaacc > 6:355726/1‑149 (MQ=255) tttCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGccaacc > 4:161372/1‑149 (MQ=255) ttCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGccaac < 2:368636/147‑1 (MQ=255) gcgGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGccaaccccaa < 3:127295/149‑1 (MQ=255) cgGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGccaaccccaac < 2:334658/149‑1 (MQ=255) aaG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGCCAACCCCAACCCGGt > 6:365560/1‑149 (MQ=255) | AGGGTATCAATGAGTTGAACATTGGCCATGCGCTGGTGGCGCATGCCTTGTTTGTCGGCTTCAAGGCTGCTGTGGCCGAGATGAAGGCGCTGATCGTGGCGGCTTCGCGCTGATTGTTGGTCGCCTGTACCGGCC‑TTTTCGCGGGCAAG‑CCCGCGAAGAGGCCAGCACAGGCGGCCGATCACTCGGCAGGAAACACCAGGGTAAACCGGGTAGGCCCCAGGGGGCAGCTGCTGACCTCGACCCGCCCGCCATGCAACTGCATGATCGACTTCACGATCGCCAACCCCAACCCGGT > NC_002947/1637179‑1637473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |