Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,795,447 T→C 100% L87P (CTG→CCG)  PP_1600 → Skp‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,795,4470TC100.0% 292.5 / ‑6.8 86L87P (CTG→CCG) PP_1600Skp‑like protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (40/44);  minor base A (2/0);  total (42/44)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CGCCAAGAAGTATGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCTGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGC  >  NC_002947/1795304‑1795592
                                                                                                                                               |                                                                                                                                                 
cgccAAGAAGTATGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGc                                                                                                                                              >  7:49819/1‑149 (MQ=255)
      gaagTATGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGt                                                                                                                                        <  8:338186/149‑1 (MQ=255)
          tATGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTc                                                                                                                                      >  4:43799/1‑147 (MQ=255)
            tGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAg                                                                                                                                   <  2:48047/148‑1 (MQ=255)
             gCGGTTGATGCCTCGAAGAAATTCGGTCCGAAACTTACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGc                                                                                                                                  <  4:233178/148‑1 (MQ=255)
                gTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCaa                                                                                                                                >  8:83557/1‑147 (MQ=255)
                    aTGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTc                                                                                                                                      >  4:102780/1‑137 (MQ=255)
                    aTGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTc                                                                                                                                      <  3:102780/137‑1 (MQ=255)
                         gagaAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCTAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGa                                                                                                                     >  6:223211/1‑149 (MQ=255)
                         gagaAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCaa                                                                                                                                    <  5:97276/134‑1 (MQ=255)
                         gagaAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCaa                                                                                                                                    >  6:97276/1‑134 (MQ=255)
                           gaagaaATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGAtt                                                                                                                   >  5:195336/1‑149 (MQ=255)
                            aagaaATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCaaaa                                                                                                                              >  3:292365/1‑137 (MQ=255)
                            aagaaATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCaaaa                                                                                                                              <  4:292365/137‑1 (MQ=255)
                             agaaATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttc                                                                                                                 <  8:54791/149‑1 (MQ=255)
                              gaaATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttc                                                                                                                 >  6:338026/1‑148 (MQ=255)
                                aaTTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttccag                                                                                                              <  3:43799/149‑1 (MQ=255)
                                aaTTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttcca                                                                                                               <  2:285567/148‑1 (MQ=255)
                                     ggTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttccagttcca                                                                                                         <  6:55148/149‑1 (MQ=255)
                                        ccGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCTAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTc                                                                                                      <  5:223211/149‑1 (MQ=255)
                                         cGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTc                                                                                                      >  5:197387/1‑148 (MQ=255)
                                           cAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCaa                                                                                                   <  1:326787/149‑1 (MQ=255)
                                                 aCCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTGCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACt                                                                                             >  5:420558/1‑149 (MQ=255)
                                                    aaGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGaa                                                                                          >  3:191025/1‑149 (MQ=255)
                                                    aaGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGaa                                                                                          <  6:195336/149‑1 (MQ=255)
                                                        tGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACg                                                                                        >  7:356351/1‑147 (MQ=255)
                                                         gAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGccc                                                                                                                         >  7:353834/1‑113 (MQ=255)
                                                         gAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGccc                                                                                                                         <  8:353834/113‑1 (MQ=255)
                                                         gAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAg                                                                                     >  3:273618/1‑149 (MQ=255)
                                                         gAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAg                                                                                     >  5:58228/1‑149 (MQ=255)
                                                              gCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAg                                                                                <  6:149910/149‑1 (MQ=255)
                                                               ccTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAgg                                                                               <  8:356351/149‑1 (MQ=255)
                                                               ccTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAgg                                                                               >  2:411264/1‑149 (MQ=255)
                                                               ccTGGAAAGCAGGGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAgg                                                                               <  4:371861/149‑1 (MQ=255)
                                                                cTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAg                                                                                                  >  5:366074/1‑129 (MQ=255)
                                                                cTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAg                                                                                                  <  6:366074/129‑1 (MQ=255)
                                                                  ggAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCg                                                                            >  8:111797/1‑149 (MQ=255)
                                                                  ggAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCg                                                                            >  8:106132/1‑149 (MQ=255)
                                                                     aaGCTGTGCCAAGGGCATCCAGGACCGCCTGATCATGGGCGGCGAGAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTGCAGTTCCTGTCCAAGGAACTGAACGAAGCCAAGTCCGttt                                                                         <  6:398231/149‑2 (MQ=255)
                                                                        cAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCt                                                                       >  2:193090/1‑148 (MQ=255)
                                                                           ccgatgtggCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGAGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGAt                                                                    <  1:293205/141‑1 (MQ=255)
                                                                             ccAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCaaaa                                                                                                                              >  2:142370/1‑88 (MQ=255)
                                                                             ccAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCaaaa                                                                                                                              <  1:142370/88‑1 (MQ=255)
                                                                             ccAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATcgc                                                                 <  6:197387/149‑1 (MQ=255)
                                                                             ccAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATcgc                                                                 >  2:301844/1‑149 (MQ=255)
                                                                              cAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATcgcg                                                                <  1:411264/149‑1 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGCGCGCCCGGAGCTCGAGTTCAAg                                                                                                                                   <  7:60384/81‑1 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACt                                                                                             <  1:388795/119‑1 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACt                                                                                             >  2:388795/1‑119 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGa                                                               <  7:111797/149‑1 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGa                                                               <  7:106132/149‑1 (MQ=255)
                                                                               aaGGGCATCCAGGACCGCCTGATCAAGGGCGGCAACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAg                                                                                                                                   >  8:60384/1‑81 (MQ=255)
                                                                                aGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGAc                                                              <  4:191025/149‑1 (MQ=255)
                                                                                   gCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGt                                                                                                                                        >  7:170608/1‑72 (MQ=255)
                                                                                   gCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGt                                                                                                                                        <  8:170608/72‑1 (MQ=255)
                                                                                   gCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCAGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGACGCCAAGGCCGTTGCtcct                                                                    >  2:293205/1‑137 (MQ=255)
                                                                                      tCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGGACGAAGCCAAGGCCGTTGCTGATCGCGACATGCt                                                         >  1:111497/1‑148 (MQ=255)
                                                                                        cAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCaa                                                      <  4:4547/149‑1 (MQ=255)
                                                                                        cAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCAGATCGCGACATGCTCaa                                                      <  3:115797/149‑1 (MQ=255)
                                                                                                ccTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttc                                                                                                                 >  3:159545/1‑82 (MQ=255)
                                                                                                ccTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATttc                                                                                                                 <  4:159545/82‑1 (MQ=255)
                                                                                                ccTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTg                                               >  5:226026/1‑148 (MQ=255)
                                                                                                ccTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTg                                               >  5:23849/1‑148 (MQ=255)
                                                                                                  tGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCaa                                                      <  8:183433/139‑1 (MQ=255)
                                                                                                  tGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCaa                                                      >  7:183433/1‑139 (MQ=255)
                                                                                                   gATCAAGGGAGGAGACAAGATGCAGCAGCAGCAGCGTGAGCTCCCCGACCTCGAGATCAAGCAAAATGCCCGCGATATACAGTACAAGTCCAAGGAACATAACGAAGCCAAGACCCTACCTCATCTCGACATGCTCAAGCAACTGAAGc                                           >  4:4698/1‑149 (MQ=255)
                                                                                                       aaGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGaa                                       <  7:83557/149‑1 (MQ=255)
                                                                                                        aGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAg                                      <  6:23849/149‑1 (MQ=255)
                                                                                                             ggcgACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGGACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGa                                 <  2:111497/149‑1 (MQ=255)
                                                                                                                gACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGa                                                                     >  4:2496/1‑110 (MQ=255)
                                                                                                                gACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGa                                                                     <  3:2496/110‑1 (MQ=255)
                                                                                                                gACAAGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTACAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATgg                              >  1:275232/1‑149 (MQ=255)
                                                                                                                 aCAAGATGCAGCAGCAGGATCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAAc                                                                                              <  8:190188/84‑1 (MQ=255)
                                                                                                                 aCAAGATGCAGCAGCAGGAGCGTGAGCGCAAGGAGCTCGAGTTCAAGCAAAAGGCCGGCGATTTCCAGTTCCAGTCCAAGGaaa                                                                                              >  7:190188/1‑83 (MQ=255)
                                                                                                                    aGATGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCt                          >  5:403324/1‑149 (MQ=255)
                                                                                                                       tGCAGCAGCAGGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTc                       >  2:385300/1‑149 (MQ=255)
                                                                                                                             agcagGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGaa                 <  8:41778/149‑1 (MQ=255)
                                                                                                                               cagGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCAACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGt               <  1:301844/149‑1 (MQ=255)
                                                                                                                                agGAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGt               >  1:63139/1‑148 (MQ=255)
                                                                                                                                  gAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCt                          >  5:371690/1‑135 (MQ=255)
                                                                                                                                  gAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCt                          <  6:371690/135‑1 (MQ=255)
                                                                                                                                  gAGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTCAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGa             >  6:51083/1‑148 (MQ=255)
                                                                                                                                   aGCGTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATc           <  8:49819/149‑1 (MQ=255)
                                                                                                                                      gTGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATc           >  7:170539/1‑146 (MQ=255)
                                                                                                                                       tGAGCGCCCGGAGCTCGAGTTCAAGCAAAAGGCCCTCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCaaga       <  5:338026/149‑1 (MQ=255)
                                                                                                                                            gcCCGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGggc  <  6:226026/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                 
CGCCAAGAAGTATGCGGTTGATGCCGAGAAGAAATTCGGTCCGCAACTGACCAAGCTGAAAAGCCTGGAAAGCAGTGCCAAGGGCATCCAGGACCGCCTGATCAAGGGCGGCGACAAGATGCAGCAGCAGGAGCGTGAGCGCCTGGAGCTCGAGTTCAAGCAAAAGGCCCGCGATTTCCAGTTCCAGTCCAAGGAACTGAACGAAGCCAAGGCCGTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGC  >  NC_002947/1795304‑1795592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑