| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,884,398 | G→T | 7.5% | intergenic (‑731/‑220) | PP_1691 ← / → PP_1692 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,884,398 | 0 | G | T | 7.5% | 244.1 / 6.1 | 83 | intergenic (‑731/‑220) | PP_1691/PP_1692 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (35/40); new base T (2/5); total (38/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
GCCTCGCCAATGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATCCTTCA > NC_002947/1884251‑1884546 | gcCTCGCCAATGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGa < 2:334014/149‑1 (MQ=255) gcaaaTGCCTTTACTGGGTGGTTAAGTATATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCTAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACttt < 7:240623/146‑3 (MQ=255) gCCAATGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgt < 6:339795/149‑1 (MQ=255) cAATGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCACCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgtg > 7:343059/1‑148 (MQ=255) aTGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTTCCTGTGGAt < 3:334499/149‑1 (MQ=255) cTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTc < 3:23096/149‑1 (MQ=255) cTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTc < 3:108927/149‑1 (MQ=255) cTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAg > 1:366302/1‑149 (MQ=255) cGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAgcgc < 1:161495/149‑1 (MQ=255) cGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAgcgc > 4:6110/1‑149 (MQ=255) cGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAgcgc < 4:160061/149‑1 (MQ=255) cGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGAACAAAGCCCCCATTTAACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCAACAGAGTTATCCACAGGAACTGTGGATTGTCCAGAgcgc > 3:165833/1‑149 (MQ=255) gTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGc > 8:163490/1‑149 (MQ=255) ttAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGc < 2:366302/148‑1 (MQ=255) aaGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGctc < 8:354326/148‑1 (MQ=255) aGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTa < 8:293111/149‑1 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTTCCTGTGGAta > 4:197172/1‑127 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTTCCTGTGGAta < 3:197172/128‑2 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgt < 2:6906/123‑1 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgt > 1:6906/1‑123 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGa > 4:352308/1‑126 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGa < 3:352308/126‑1 (MQ=255) tCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAg > 7:323837/1‑148 (MQ=255) aaTGAAAAAAAACACTATTTTTAGCTGGTGAAAATATCGTCAGTTTGACCAAAGCCACCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCAc > 8:335917/1‑149 (MQ=255) aaTGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgt > 6:226976/1‑121 (MQ=255) aaTGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACtgt < 5:226976/121‑1 (MQ=255) aaTGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCAc < 6:2946/149‑1 (MQ=255) aaTGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCAc > 5:139196/1‑149 (MQ=255) aaTCAAAAAAAACACTATTTTTAGCTGGTCAAACAATCGTCAGTTTCACCAACCCCCCCATTTCCCGGGGTTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGATCTGTGGATTGTCCCGAGCGCTTGCTCTAGCAc < 8:343059/149‑1 (MQ=255) tGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACgg > 6:81164/1‑149 (MQ=255) tGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCACCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCACGAGCGCTTGCACTATCACgg > 7:165913/1‑149 (MQ=255) aaaaaaCACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGt < 7:52507/149‑1 (MQ=255) aaaCACTATTTTTAGCTGGTGATAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTTCCTGTGGAtaactc < 3:309289/121‑6 (MQ=255) aaaCACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTTCCTGTGGAtaactc > 4:309289/1‑116 (MQ=255) aaCACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGc > 3:311092/1‑147 (MQ=255) cTATTTTTAGCTGGTGAAAAAATCGTCAGGTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCaa < 3:87649/149‑1 (MQ=255) tATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAAt > 6:382729/1‑149 (MQ=255) tttttAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAAt < 5:81164/147‑1 (MQ=255) tttttAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATgg < 4:311092/149‑1 (MQ=255) tttttAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATg < 4:192157/148‑1 (MQ=255) tttttAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTACTCTAGCACGGGCGTGCCAGCAAt < 5:323421/147‑1 (MQ=255) tttAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGa > 6:361129/1‑149 (MQ=255) tAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGAt < 5:408528/148‑1 (MQ=255) gCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGa < 3:6110/149‑1 (MQ=255) tGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGAt > 7:392035/1‑144 (MQ=255) tGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGAt < 8:392035/144‑1 (MQ=255) tGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTc > 6:271094/1‑149 (MQ=255) gAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTcc > 5:202574/1‑149 (MQ=255) tCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGc > 2:36114/1‑148 (MQ=255) tttGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGc < 7:163490/149‑1 (MQ=255) tttGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGc > 3:2321/1‑149 (MQ=255) ccAAAGCCACCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCaa < 7:335917/149‑1 (MQ=255) cAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCaa > 6:330853/1‑148 (MQ=255) cAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAAc < 6:202574/149‑1 (MQ=255) aGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGa > 7:173131/1‑149 (MQ=255) gCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGAc < 5:69268/149‑1 (MQ=255) ccccATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGTAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATc < 1:59321/130‑1 (MQ=255) ccccATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATc > 2:59321/1‑130 (MQ=255) ccccATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCg > 2:192335/1‑149 (MQ=255) cccATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGACCACCGACTTATCCACAGCAACTGTGGATTGTCCCGACCGCTAGCTCTAGCACGGGCGACCCAGCAATGGGATCGACTGTc > 4:109665/1‑121 (MQ=255) ccATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGt > 2:124082/1‑149 (MQ=255) gggggTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTcc < 1:192335/149‑1 (MQ=255) tgTTTGAGGGTTATGAGAGGGGGGTGTCCACCGAGTTATCCACAGTAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCAcc < 8:165913/148‑1 (MQ=255) gTTTGAGGGGTATGATAGGGGGTTGTACACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCt < 4:165833/149‑1 (MQ=255) gTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGgtcgtc > 6:139905/1‑144 (MQ=255) gTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGgtcgtc < 5:139905/144‑1 (MQ=255) gTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTc < 6:139196/149‑1 (MQ=255) tATGAGAGGGGGTTTTCCACCGAGTTATCCACAGGAACTGTGGATTCTCCCGAGAGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGAATGTCCGACAATCGCCATCCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTc > 2:149126/1‑148 (MQ=255) tGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCaa < 5:330853/148‑1 (MQ=255) agGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGaaaa < 5:382729/149‑1 (MQ=255) ggggTTGTCCACCGAGTTATCCACACGAACTGAGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCAAGCAATGGGATGGACTTTCAGACAATCGCCATGATCCAACAGACCGGTTGGTCGTCCACCTGAAAAAGACAAGAAAAg > 2:231153/1‑148 (MQ=255) gTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCAtt < 8:323837/148‑1 (MQ=255) aCCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCt < 3:346299/121‑1 (MQ=255) aCCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCt > 4:346299/1‑121 (MQ=255) tCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCa < 2:289787/148‑1 (MQ=255) ccACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTg < 7:264756/112‑1 (MQ=255) ccACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTg > 8:264756/1‑112 (MQ=255) ccACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAAt > 7:109948/1‑149 (MQ=255) cacaGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAAt > 8:330494/1‑148 (MQ=255) acaGGAACTTTGGATTGTCCCTAGCGATTGCTCTAGCACGGGCGTTCCAGCAATGGGATGGACTGTCCGACAATCGCAATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATcc < 5:245797/149‑1 (MQ=255) acaGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATcc > 1:38484/1‑149 (MQ=255) aGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATCCtt > 5:192588/1‑149 (MQ=255) aGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATCCtt < 1:124082/149‑1 (MQ=255) gAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAATGATCATTGAATTTTTTTTCAATCCTTCa < 1:231153/149‑1 (MQ=255) gAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATCCTTCa < 1:36114/149‑1 (MQ=255) | GCCTCGCCAATGCCTTGACTGCGTGGTTAAGTCAATGAAAAAAAACACTATTTTTAGCTGGTGAAAAAATCGTCAGTTTGACCAAAGCCCCCATTTCACGGGGGTTTGAGGGGTATGAGAGGGGGTTGTCCACCGAGTTATCCACAGGAACTGTGGATTGTCCCGAGCGCTTGCTCTAGCACGGGCGTGCCAGCAATGGGATGGACTGTCCGACAATCGCCATGCTCCAACAGACCGGTTGGTCGTCCACCTGAAAACGTCAAGAAAAGATCATTGAATTTTTTTTCAATCCTTCA > NC_002947/1884251‑1884546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |