| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,087,333 | C→G | 9.2% | intergenic (+146/+772) | PP_1865 → / ← aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,087,333 | 0 | C | G | 9.2% | 205.0 / 10.7 | 76 | intergenic (+146/+772) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| Reads supporting (aligned to +/- strand): ref base C (29/39); new base G (2/5); total (32/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.16e-01 | |||||||||||
GGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGT > NC_002947/2087190‑2087476 | gggATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTGCCGGGAGCACGCGCTGCAGGCCCCATCCATgg > 7:186597/1‑149 (MQ=255) aTGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGc < 7:173531/149‑1 (MQ=255) cccTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCAAGCGCTG‑AGGCCCCATGGATGGGGCCtgca < 3:232921/149‑4 (MQ=14) ccTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATGGATGGGGCCtgca < 1:12907/149‑4 (MQ=255) ccTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATGGATGGGGCCtgca < 1:254812/149‑4 (MQ=255) cTTACGGCGGGTCCCTTTTTGTCGTGGCAAAATGTAACCAAAAACGGGGGGCTCCCATTATCC‑GGCCCCAACGTTCCGCGTCCCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑Ca < 1:332959/149‑1 (MQ=17) gcggGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCGTgc < 8:294992/149‑2 (MQ=17) tCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTGCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGagaacg > 5:373411/1‑144 (MQ=255) tCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCtt < 6:373411/142‑1 (MQ=255) tCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGc < 7:368237/149‑1 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCa < 8:14197/148‑1 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCAt < 6:399389/149‑1 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCAt > 7:202550/1‑149 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCAt > 7:64458/1‑149 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCCCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCAt > 5:359760/1‑149 (MQ=255) ccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCACGCTACCGCCCTTGAGCCCGGG‑GCACCCCCGGCCGGCCCCAGCCAAGGGGCCG‑CCGCCCATGAAGGGc > 6:25721/1‑147 (MQ=14) cTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCAt > 1:303151/1‑149 (MQ=255) tttttGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATc > 5:94426/1‑148 (MQ=255) tGTCGTTGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATg < 2:170464/148‑1 (MQ=255) tGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCa < 3:217248/137‑1 (MQ=255) gCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATGGATGCCCGTCa < 5:357996/148‑1 (MQ=255) aaaGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATctcc < 3:389163/149‑1 (MQ=255) aaGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCAAGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATctccc < 7:379073/149‑1 (MQ=255) gAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATctccctcc > 4:242187/1‑149 (MQ=255) aaaacCCGGCGGCTCCCCTCATCC‑TGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCCTCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAAt < 6:336376/149‑1 (MQ=17) aaCCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGcc < 3:242187/149‑1 (MQ=255) aaCCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGcc < 4:55350/149‑1 (MQ=255) ggCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCACGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTc < 8:201973/149‑1 (MQ=255) cTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTACTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCgg > 1:265559/1‑149 (MQ=255) cccATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑c < 3:150776/93‑1 (MQ=255) cccATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCCGGAGCACGCGCTGCAGGCCCCCTCCAAGGGGccgc > 4:150776/1‑91 (MQ=18) ccATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTACTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGc < 2:265559/147‑1 (MQ=255) cc‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATACAAGGGGCCT‑AAGCGCTTGAACGGCATCCATGCCCGTCAACTCCCTCCGCAAAGCCTCCACTCGGCCTCCAGAAg > 2:51315/1‑149 (MQ=18) c‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCAtct < 3:180816/115‑1 (MQ=255) c‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGt < 2:303151/149‑1 (MQ=255) ggCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTc < 1:1651/149‑1 (MQ=255) cGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCt < 3:262222/148‑1 (MQ=255) cGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCt < 8:202550/148‑1 (MQ=255) gCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGc < 7:132638/149‑1 (MQ=255) gCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGc < 8:64458/149‑1 (MQ=255) gCTGCGC‑T‑CCGGGGTCCCCGCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGTCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGc < 5:305390/149‑1 (MQ=255) cTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTTCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCCTCCATGCCCGTCATCTCCCTCCGCAAAGCCTCCCCACGGCCTCCAGAAGTCGCaaaaatcg > 8:16745/1‑143 (MQ=17) t‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGcctcc < 6:389160/126‑1 (MQ=255) t‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGcctcc > 5:389160/1‑126 (MQ=255) ccGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCt < 5:30746/112‑1 (MQ=255) ccGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCt > 6:30746/1‑112 (MQ=255) ggggTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGa < 1:51315/149‑1 (MQ=255) cccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGAc < 3:15401/68‑1 (MQ=40) cccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGAc > 4:15401/1‑68 (MQ=40) cccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCCCCTGAAGTCGCAATCTGCGTCGCCTGGACTAcc < 6:359760/148‑1 (MQ=255) ccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgc > 3:63536/1‑149 (MQ=255) ccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgc < 4:63536/149‑1 (MQ=255) ccTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATCGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgc > 8:24554/1‑149 (MQ=255) cTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgcg > 6:206333/1‑149 (MQ=255) gCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgcgc < 6:94426/147‑1 (MQ=255) cT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCt < 7:16745/149‑1 (MQ=255) t‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCTATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCt > 1:124747/1‑148 (MQ=255) t‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCtt > 4:194767/1‑149 (MQ=255) cGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCtt < 5:206333/147‑1 (MQ=255) cGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCt > 2:393861/1‑146 (MQ=255) gCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGaa < 8:186597/149‑1 (MQ=255) cTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAg > 1:203985/1‑148 (MQ=255) cgCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCaaaa < 6:326719/146‑1 (MQ=255) aGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCGTGGACTACCGCGCGCTTAGAAGCAAGATCAAATGc > 5:326719/1‑149 (MQ=255) cACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGc > 5:359933/1‑147 (MQ=255) aCGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCgag < 6:359933/149‑1 (MQ=255) gcTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGc > 7:173215/1‑149 (MQ=255) tGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGc > 3:74369/1‑104 (MQ=255) tGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGc < 4:74369/104‑1 (MQ=255) ctgaGGCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCg > 7:242100/4‑148 (MQ=255) tgtggCCCCATGGATGGGGCCTGCAGCGCTTGACGTGCATCCATGCCGGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTAGCAATCTGCGTCGCCTGGACTACcgcgc < 3:375598/115‑1 (MQ=21) tgaGGCCCCATGGATGGGGCATGCAGCGCTTTACCGGCATCCATGCCAGTCATATCACTCCGAAATGCCTCCACACGGCCTCCTGAAGTCGCAATCTGCCTAGCCTCGACTACcgccc > 4:375598/3‑116 (MQ=12) cAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCaa > 1:58231/1‑128 (MQ=255) cAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCaa < 2:58231/128‑1 (MQ=255) aGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAAtt > 5:191211/1‑149 (MQ=255) cccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGt > 7:345973/1‑149 (MQ=255) ccatGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGaa > 7:43895/1‑133 (MQ=255) ccatGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGaa < 8:43895/133‑1 (MQ=255) | GGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCC‑GGCCCCTACGCTGCGC‑T‑CCGGGGTCCCCTCGCT‑CCGGCCTTGCTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGT > NC_002947/2087190‑2087476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |