Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,336,497 | C→T | 8.3% | intergenic (‑41/+39) | PP_2052 ← / ← PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,336,497 | 0 | C | T | 8.3% | 134.4 / 2.8 | 48 | intergenic (‑41/+39) | PP_2052/PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (26/18); new base T (2/2); total (28/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
GCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTG > NC_002947/2336356‑2336623 | gcttgcttGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGc > 8:246336/1‑149 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGTTGCAGGC‑gagat < 5:120881/149‑2 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑gagat < 4:173484/149‑2 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGaa > 8:59777/1‑149 (MQ=255) tgtCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGgtgt < 7:246336/149‑1 (MQ=255) tCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGgtgtgt > 6:348590/1‑149 (MQ=255) cTGATGCTCAGGCGTTCGTGGTGTAATTGGGGGCAATCAATATCGAACTGGGGGGTTAAATTTTGTTTCCCGTTATTTTAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGa < 1:332301/149‑1 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGgt > 4:38367/1‑142 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGgt < 3:38367/142‑1 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAg > 6:266084/1‑149 (MQ=255) aGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCt < 4:79014/143‑1 (MQ=255) aGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCt > 3:79014/1‑143 (MQ=255) gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTggg < 3:35428/149‑1 (MQ=255) tCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCa < 7:59777/149‑1 (MQ=255) gtgtCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTggg > 8:123928/1‑142 (MQ=255) gtgtCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTggg < 7:123928/142‑1 (MQ=255) tCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCAGAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAg < 1:60409/149‑1 (MQ=255) gAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGTTGCAGGC‑gaga < 4:70009/115‑1 (MQ=255) gAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGTTGCAGGC‑gaga > 3:70009/1‑115 (MQ=255) gAAGAGCGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTGGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGt < 5:292876/148‑1 (MQ=255) agGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCgggg < 5:348590/149‑1 (MQ=255) agGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCgggg < 5:266084/149‑1 (MQ=255) tGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTTAGATGCAGTGGGGGCA‑GTCAGGTCGGGGGca > 7:277792/1‑148 (MQ=255) gCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAgg > 1:70119/1‑101 (MQ=255) gCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAgg < 2:70119/101‑1 (MQ=255) atccatATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGt > 3:134356/1‑149 (MQ=255) tCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAg > 3:339204/1‑149 (MQ=255) cGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGa > 8:171412/1‑145 (MQ=255) cGAAGATGGCGATGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGa < 7:171412/145‑1 (MQ=255) gactaTGGCGCGGAAAATCTGTTTACCGTGAACGTACAGCCTTGGCGGTTGCCCCTTGTCGTTGCGGCAGGCATCTCCCCTGCAACAGGC‑GAGAACGGTGTGTGCGCTGCAGTGGGGGCA‑GTCAGGGCGGGGGCACACGTTCGACAggg < 8:286626/145‑1 (MQ=255) aaGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAgggg > 1:10841/1‑149 (MQ=255) aaaaTCTGTTTACCGTGATAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTAGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTAGACAGGGGGACGCTCAGGAg > 4:308545/1‑149 (MQ=255) aTCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGAc > 2:310759/1‑137 (MQ=255) aTCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGAc < 1:310759/137‑1 (MQ=255) aCCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCa > 1:60265/1‑145 (MQ=255) aCCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTAGCCAGGCGGAGGATCAGGAGTGCCGCAGAgg > 7:317650/1‑149 (MQ=255) tGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGc < 4:68017/127‑1 (MQ=255) tGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGc > 3:68017/1‑127 (MQ=255) tGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAg > 4:27148/1‑149 (MQ=255) aaGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcggggcg > 5:228326/1‑149 (MQ=255) cTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGc > 6:149035/1‑149 (MQ=255) cTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGGGAGCTGCAGTGGGGGGA‑GTCAGCTCCGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGc > 1:110911/1‑149 (MQ=255) ccccTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCagag > 4:45027/1‑121 (MQ=255) ccccTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCagag < 3:45027/121‑1 (MQ=255) ccTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCagag > 7:48921/1‑149 (MQ=255) ttGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCATGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcgggg > 1:122448/1‑129 (MQ=255) ttGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGa > 1:148554/1‑100 (MQ=255) accgttctcGCCTGTTGCAGGC‑GAGATCGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCag > 3:316204/6‑102 (MQ=38) cAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTg > 3:144109/1‑127 (MQ=255) | GCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGC‑GAGAACGGTGTGTGAGCTGCAGTGGGGGCA‑GTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTG > NC_002947/2336356‑2336623 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |