Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,486,831 | C→T | 6.0% | intergenic (+64/‑120) | spuC‑I → / → PP_2181 | polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,486,831 | 0 | C | T | 6.0% | 304.9 / 5.6 | 99 | intergenic (+64/‑120) | spuC‑I/PP_2181 | polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (49/44); new base T (4/2); total (53/46) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.31e-01 |
GGTGATCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTGCAC > NC_002947/2486686‑2486962 | ggTGATCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGAt < 3:212045/149‑1 (MQ=255) gTGATCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCGAGCACCGCGCAGGCGGTGCTTGa < 2:66030/147‑1 (MQ=38) gTGATCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATc > 6:276537/1‑149 (MQ=255) tCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCGAGCACCGCGCAGGCGGTGCTTGATctcac < 2:254382/149‑5 (MQ=38) agcaTCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTgcc > 5:84357/4‑149 (MQ=255) aGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTgcc > 2:338364/1‑149 (MQ=255) gTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTgccg > 1:218783/1‑149 (MQ=255) gAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATc > 2:113245/1‑149 (MQ=255) aaGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCg > 3:339225/1‑149 (MQ=255) aaGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCg > 4:195179/1‑149 (MQ=255) aTCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACAt < 1:338364/149‑1 (MQ=255) gacgaACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACAttt > 1:8382/1‑148 (MQ=255) cgaACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCTGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCAc < 6:306764/149‑1 (MQ=255) cTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGCACATTTCACGTCa < 1:113245/149‑1 (MQ=255) cTGGTGGAGAAAGCCCGACAGTGCCTGGACCTGTCCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCTGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCa < 8:337039/149‑1 (MQ=255) gtggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAgg > 4:322207/1‑148 (MQ=255) gtggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAgg > 2:67292/1‑148 (MQ=255) gtggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGc < 6:84357/149‑1 (MQ=255) gtggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGc < 2:109604/149‑1 (MQ=255) gtggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGc > 7:197087/1‑149 (MQ=255) tggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCa > 4:115535/1‑149 (MQ=255) tggAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCACAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCAGCGTACATTTAACGTAAGGCa > 8:388450/1‑149 (MQ=255) cccGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCAc > 5:341085/1‑132 (MQ=255) cccGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCAc < 6:341085/132‑1 (MQ=255) ccGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACAt < 2:272700/126‑1 (MQ=255) ccGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACAt > 1:272700/1‑126 (MQ=255) tGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCAttt < 4:339225/149‑1 (MQ=255) cTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGACTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCAGCCATCGTAAATTTCACGTCAGGCACCTTACGCAAAGCATTTTGc > 2:56402/1‑149 (MQ=255) gacctgacctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCttt < 1:67292/149‑1 (MQ=255) gacctgacctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCttt < 2:8382/149‑1 (MQ=255) gacctgacctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCt < 5:200645/147‑1 (MQ=255) cctgacctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTtgt < 3:115535/149‑1 (MQ=255) ctgacctTTGAGGCTGTGCGGTAACA‑GCAGATGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGTTGCTCGATCGGTGCCGCCATCGTACATTTCACTTCAGTCACCTTCCGCAAAGCAAAATGCTTtgcg < 8:223838/149‑3 (MQ=255) ctgacctATGAGGCTGTTCGGTAACAGGCAGAGGGCCTGGTTAGCTGTTCTCAGCACATGTGAGATCAAGAACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTtgt > 1:220028/1‑149 (MQ=255) tgacctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTtgtg > 4:283541/1‑148 (MQ=255) acctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGaaa < 6:195916/149‑1 (MQ=255) ctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGc < 5:375283/117‑1 (MQ=255) ctATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGc > 6:375283/1‑117 (MQ=255) tATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAgg < 5:200248/115‑1 (MQ=255) tATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAgg > 6:200248/1‑115 (MQ=255) aTGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGa < 5:362822/143‑1 (MQ=255) aTGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGa > 6:362822/1‑143 (MQ=255) tGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGaa < 6:310384/148‑1 (MQ=255) gTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGGCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCAAAATGCTTtgcg < 2:265885/134‑3 (MQ=255) gTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCAAAATGCTTtgcg > 1:265885/1‑132 (MQ=255) ttCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTa < 5:12312/147‑1 (MQ=255) ttCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTa > 6:12312/1‑147 (MQ=255) cGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTa > 5:112292/1‑89 (MQ=255) cGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTa < 6:112292/89‑1 (MQ=255) gTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTg > 8:134419/1‑122 (MQ=255) gTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTg < 7:134419/122‑1 (MQ=255) aCA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTg < 2:220028/148‑1 (MQ=255) aCA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTg < 3:195179/148‑1 (MQ=255) a‑gcagAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTggg > 6:9941/1‑148 (MQ=255) a‑gcagAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCACAAAGCAAAATGCTTtgcgga < 4:154894/126‑5 (MQ=255) a‑gcagAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCACAAAGCAAAATGCTTtgcgga > 3:154894/1‑122 (MQ=255) gcagAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGGTTtgt > 2:14788/1‑122 (MQ=255) gagGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATc > 2:217143/1‑148 (MQ=255) agGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTgg < 5:311964/142‑1 (MQ=255) cTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCTCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCAGTTcc > 1:304200/1‑149 (MQ=255) gTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGt < 2:218783/149‑1 (MQ=255) aGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCg > 4:389780/1‑64 (MQ=255) aGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCg < 3:389780/64‑1 (MQ=255) gCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTg > 3:64148/1‑148 (MQ=255) cTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCt < 4:355940/146‑1 (MQ=255) cTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCt > 3:355940/1‑146 (MQ=255) cTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGa > 5:212184/1‑148 (MQ=255) ctcAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTc < 3:322207/148‑1 (MQ=255) aGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGa < 6:212184/149‑1 (MQ=255) gCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGAt < 5:9941/149‑1 (MQ=255) cACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGAt > 8:90182/1‑148 (MQ=255) aCCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATcc < 8:21363/124‑1 (MQ=255) aCCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATcc > 7:21363/1‑124 (MQ=255) cTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCaa > 3:137159/1‑149 (MQ=255) tgtgAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGa < 5:391763/143‑1 (MQ=255) tgtgAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGa > 6:391763/1‑143 (MQ=255) tgAGATCAAGCACCGCCTGTGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTACGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCa > 6:94360/1‑149 (MQ=255) tgAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGaa > 3:298435/1‑97 (MQ=255) tgAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGaa < 4:298435/97‑1 (MQ=255) tgAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAAcc < 7:90182/148‑1 (MQ=255) ccgaTCGAGCACCGCGCAGGCGGTGCTTGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAACCATTTTGCTGTGTGAAATGAATCCTGTACTGTTCTGGTCCTCCATTTCCCGTCTGAACGTCGCGATTCAAccct > 4:102584/3‑147 (MQ=255) agaTCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACGTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGaaa < 7:165666/132‑1 (MQ=255) agaTCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACGTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGaaa > 8:165666/1‑132 (MQ=255) agaTCAAACACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAAc > 5:121427/1‑145 (MQ=255) agaTCAAACACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAAc < 6:121427/145‑1 (MQ=255) gaTCGAGCACCGCGCAGGCGGTGCTTGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATg > 5:392372/1‑148 (MQ=255) gaTCGAGCACCGCGCAGGCGGTGCTTGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATg > 5:59105/1‑148 (MQ=255) gaTCGAGCACCGCGCAGGCGGTGCTTGATAGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCACGTCTGAAAGTCGCGATTCAACCATg > 1:27494/1‑148 (MQ=255) gaTCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATg > 2:205687/1‑148 (MQ=255) tCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGaaa < 3:283541/149‑1 (MQ=255) aaGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCttt < 7:20960/80‑1 (MQ=255) aaGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCttt > 8:20960/1‑80 (MQ=255) aGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTg > 6:144588/1‑149 (MQ=255) gCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTg > 3:62774/1‑148 (MQ=255) gCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTGc < 4:137159/149‑1 (MQ=255) cACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTGCa > 2:14966/1‑149 (MQ=255) aCCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTGCAc > 7:93733/1‑149 (MQ=255) ggTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCaa < 8:284752/124‑1 (MQ=255) ggTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCaa > 7:284752/1‑124 (MQ=255) | GGTGATCAGTATCGAAGAGATCGACGAACTGGTGGAGAAAGCCCGCAAGTGCCTGGACCTGACCTATGAGGCTGTTCGGTAACA‑GCAGAGGGCCTGGTTAGCTGTTCTCAGCACCTGTGAGATCAAGCACCGCCTGCGCGGTGCTCGATCGGTGCCGCCATCGTACATTTCACGTCAGGCACCTTCCGCAAAGCATTTTGCTTTGTGAAATGAATCCTGTACTTTTCTGGGCATCCATTTCCCGTCTGAAAGTCGCGATTCAACCATGAAAGTGCAC > NC_002947/2486686‑2486962 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |