Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,666,746 | A→T | 8.9% | intergenic (+20/‑46) | acnA‑II → / → prpF | aconitate hydratase/aconitate isomerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,666,746 | 0 | A | T | 8.9% | 152.5 / 5.6 | 56 | intergenic (+20/‑46) | acnA‑II/prpF | aconitate hydratase/aconitate isomerase |
Reads supporting (aligned to +/- strand): ref base A (20/31); new base T (3/2); total (23/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 |
CAATGGCGAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGAGCAGGCGC > NC_002947/2666603‑2666891 | cAATGGCGAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCgg < 4:328955/149‑1 (MQ=255) gCGAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCa > 4:192709/1‑149 (MQ=255) cGAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAg < 8:254893/149‑1 (MQ=255) gAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAgg > 2:290699/1‑149 (MQ=255) gAGTGCCTGGAAGTACCGGTGACCTGCCGCCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAgg < 5:371286/149‑1 (MQ=255) cTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGc > 4:148434/1‑134 (MQ=255) cTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGc < 3:148434/134‑1 (MQ=255) cTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCCCAAACCGGC‑CCCAcgggaat > 8:310805/1‑144 (MQ=255) cTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGACTGAGCATGAATCGGGGGCCGCAAAACGGC‑CCCCggggttt > 8:351662/1‑144 (MQ=255) aGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGTCCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCg < 8:218637/149‑1 (MQ=255) tcggcGGTGTCCAGACGGCAGGTCACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTGACCgg > 2:14645/5‑149 (MQ=255) gTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCg < 1:205717/148‑1 (MQ=255) gTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCg < 1:199416/148‑1 (MQ=255) cGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGAcga > 7:182936/1‑147 (MQ=255) ggTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTAt < 7:310805/149‑1 (MQ=255) ccTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGa < 5:107017/149‑1 (MQ=255) tGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCa < 6:388926/133‑1 (MQ=255) tGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCa > 5:388926/1‑133 (MQ=255) tCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATc < 7:276215/138‑1 (MQ=255) tCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATc > 8:276215/1‑138 (MQ=255) tCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCaa < 3:192709/149‑1 (MQ=255) gACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAgg < 1:288119/116‑1 (MQ=255) gACACCGCCGAGGAAGTGGCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAACCGGC‑CCCAgg > 2:288119/1‑116 (MQ=255) acacCGCCGAGGAAGTGTCTATCTACGAAGCGGGCGGGGTGCTGCAGCTCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCACGATGCCCAAGaaaa < 7:351662/149‑1 (MQ=255) cacCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGCCCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGCCTATCAGGCTGCCCAAGAatat > 8:306816/1‑149 (MQ=255) cacCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAAt < 8:182936/149‑1 (MQ=255) cacCGCCGAGAAAGTGTCTATCTACGAAGCTGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAAt < 3:186829/149‑1 (MQ=255) cacCGCCGAGAAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAAt < 3:180608/149‑1 (MQ=255) gccgAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca < 3:334523/149‑1 (MQ=255) gccgAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca < 6:153760/149‑1 (MQ=255) gccgAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca < 8:54578/149‑1 (MQ=255) ccgAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTc < 8:205772/147‑1 (MQ=255) ccgAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTc > 7:205772/1‑147 (MQ=255) gtgtCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTAccc < 2:342058/149‑1 (MQ=255) gtCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTAccc > 7:90205/1‑147 (MQ=255) cGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGa < 8:90205/149‑1 (MQ=255) gATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGa < 5:196076/148‑1 (MQ=255) aCGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGGCCCCAAACGGCGCCCCGGGGA‑TTGACCGGACTAAGAGGATTACCAAGAAAAAGTAAAAAGTAACCCCGaaaaaa > 4:408174/1‑143 (MQ=255) cGAAGGGGGCGGGGGGCTGCAGCGCTTTGCCCACGACTTCCTCGCAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTAccc < 8:392349/138‑1 (MQ=255) cGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCCAAGCGGC‑CGCAGGGGATTTCACCGGCCTAACAGGATGCCCAAGAAAATGTCACAAGTAccc > 7:392349/1‑138 (MQ=255) gcgggGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCa < 2:374181/149‑1 (MQ=255) cAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca > 7:222026/1‑110 (MQ=255) cAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca < 8:222026/110‑1 (MQ=255) aaGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca < 6:216683/85‑1 (MQ=255) aaGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTca > 5:216683/1‑85 (MQ=255) cGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCTCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTcc < 1:290699/149‑1 (MQ=255) aCCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATAAAAATCCCCGCCCCCTACATACCCGGCGGCACCAGCAAAGGCGTGTTATTcccc > 7:179866/1‑147 (MQ=255) ccGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATc < 7:134847/58‑1 (MQ=255) ccctggggCCGCTTTGCGGC‑CCCCGGGTATTCCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGccc > 3:158594/5‑149 (MQ=255) ctggggCCGCTTTGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGc < 1:143330/130‑1 (MQ=255) ctggggCCGCTTTGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGc > 2:143330/3‑132 (MQ=255) tggggCCGCTTTGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGccc > 6:97457/2‑146 (MQ=255) gggCCGCTTTGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGa < 5:97457/146‑1 (MQ=255) cGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGAGCAGgcg > 6:267829/1‑149 (MQ=255) gCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGAGCAGgcgc < 1:14645/149‑1 (MQ=255) cAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGAGCAGgcgc > 2:100805/1‑148 (MQ=255) | CAATGGCGAGTGCCTGGAAGTACCGGTGACCTGCCGTCTGGACACCGCCGAGGAAGTGTCGATCTACGAAGCGGGCGGGGTGCTGCAGCGCTTTGCCCAGGACTTCCTCGAAGCGACCGCCTGAGCATGAATCGGGGGCCGCAAAGCGGC‑CCCAGGGTATTTCACCGGACTATCAGGATGCCCAAGAAAATGTCACATGTACCCCAGATCAAAATCCCCGCCACCTACATCCGCGGCGGCACCAGCAAAGGCGTGTTCTTCCGCCTGCAAGACCTGCCCGAGCAGGCGC > NC_002947/2666603‑2666891 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |