| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,796,836 | G→T | 9.9% | intergenic (+20/‑112) | PP_t43 → / → PP_2449 | tRNA‑Val/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,796,836 | 0 | G | T | 9.9% | 269.3 / 15.7 | 90 | intergenic (+20/‑112) | PP_t43/PP_2449 | tRNA‑Val/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (44/37); new base T (5/4); total (49/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.03e-01 | |||||||||||
GCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAGTGCTCGCCC > NC_002947/2796695‑2796984 | gcattACCGGAACCCAGCGGCCCAAAAATATGCCCACCACACGACCGGAACATAGCTCAGTTGGTTACAGCACCACCTTGAAATGGTGGGGGTCTTTGGTTCGAGTCCAATTGTGCCTACCAAATCCAAAAAGGGCGATCAGAAATGAt < 2:289011/146‑1 (MQ=14)gCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGAt < 6:352403/149‑1 (MQ=255) tACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATc < 1:348292/146‑1 (MQ=255) aCAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCATTTCTGATCGcc < 7:159232/148‑1 (MQ=255) aGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATGCAAAAAGGGCGATCATTTCTGATCGCCCtt < 3:113233/149‑1 (MQ=17) gTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCATTTCTGATCGCCCtttt > 6:338543/1‑149 (MQ=255) gCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCa > 7:52499/1‑149 (MQ=255) tCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCAttt > 1:234612/1‑149 (MQ=255) gggCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgc > 1:204587/1‑149 (MQ=255) gCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCATTTCTGATCGCCCTTTTTCGATTTggta < 5:338543/149‑4 (MQ=14) gCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgcgc < 6:173434/149‑1 (MQ=255) gcgcACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGCACGTTGGTTAGAGTCCAATTGTGCCTACCAAATCGAAAAACGGCGATCAGAAATGATCTCCCTTTTTGCATTTGCTCCCGAagaagc > 3:298888/1‑148 (MQ=18) cacaCGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATc < 5:400032/113‑1 (MQ=255) cacaCGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATc > 6:400032/1‑113 (MQ=255) acacGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAAc > 8:305027/1‑148 (MQ=255) acacGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAAc < 7:305027/148‑1 (MQ=255) acacGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACg > 1:244630/1‑149 (MQ=255) acGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCgt > 3:141979/1‑141 (MQ=255) acGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCgt < 4:141979/141‑1 (MQ=255) acGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGtt < 7:348740/149‑1 (MQ=255) cGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGttt < 6:218382/149‑1 (MQ=255) gACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTg > 8:130773/1‑149 (MQ=255) cAGGCACATAGCTCAGTTGGTTTGAGCACCACCTTGACATGGTGGGGGTCGTTGCTTCGAGTCCAATTGTGCCTACCACATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTg < 8:288597/147‑1 (MQ=255) gCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAAATGTGCCTACCAAATCGAAAAAGTGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGAAGCGTGTAACTTTTGGTagc > 4:371190/1‑149 (MQ=21) aTAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCATTTGTGCCTACCAAAACGAAAAAGGGCTATCAGAAATGATCGCCAGTTTTGCATTTGAGCCCGAAGCACCATGTAACTTTTGGTCGCGTTc > 3:325396/1‑149 (MQ=18) gCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg < 5:202500/149‑1 (MQ=255) tCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCg < 2:289835/124‑1 (MQ=255) tCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCg > 1:289835/1‑124 (MQ=255) gTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTc < 5:158405/141‑1 (MQ=255) gTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTc > 6:158405/1‑141 (MQ=255) ttGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgc > 2:38492/1‑107 (MQ=255) ttGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgc < 1:38492/107‑1 (MQ=255) ttGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgc > 2:316268/1‑107 (MQ=255) ttGGTTAGAGCACCACCTTGAAATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTgc < 1:316268/107‑1 (MQ=255) gTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg > 1:339580/1‑140 (MQ=255) gTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg < 2:339580/140‑1 (MQ=255) ttAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCg > 6:118872/1‑149 (MQ=255) agagCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTATGGTCGCGGTCCGGGCATACCCCGGc > 5:144741/1‑149 (MQ=255) gagCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGc < 6:213909/148‑1 (MQ=255) gagCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGc < 2:234612/148‑1 (MQ=255) agCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg < 5:76604/135‑1 (MQ=255) agCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCgg > 6:76604/1‑135 (MQ=255) gCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTg > 5:301580/1‑149 (MQ=255) caccacCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATGCAAAAAGGGCGATCATTTCTGATCGCCCttt > 3:302351/1‑87 (MQ=14) caccacCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATGCAAAAAGGGCGATCATTTCTGATCGCCCttt < 4:302351/87‑1 (MQ=14) ccaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa < 2:244630/149‑1 (MQ=255) ccaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa < 2:204587/149‑1 (MQ=255) ccaccTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTa < 2:72895/149‑1 (MQ=255) aCATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGc < 6:301580/149‑1 (MQ=255) aTGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCg > 5:162042/1‑131 (MQ=255) aTGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCg < 6:162042/131‑1 (MQ=255) aTGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGccc > 4:266990/1‑149 (MQ=255) aTGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCATTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCTTGCTAAAATCCGacc > 7:26043/1‑149 (MQ=255) gggggTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCCCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTc > 5:358286/1‑148 (MQ=255) ggTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATAccc < 6:401615/121‑1 (MQ=255) ggTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATAccc > 5:401615/1‑121 (MQ=255) tCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTc < 5:215904/143‑1 (MQ=255) tCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTc > 6:215904/1‑143 (MQ=255) gttggttgTAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTTGTAGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTgg < 4:325396/149‑1 (MQ=255) ttGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGa < 7:130773/149‑1 (MQ=255) gTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgc > 6:39729/1‑149 (MQ=255) gTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgc > 6:33651/1‑149 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACTCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgcg > 2:146818/1‑149 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTacac > 7:14502/1‑146 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTacac < 8:14502/146‑1 (MQ=255) tCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACAcgcg > 5:364730/1‑149 (MQ=255) cAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTg > 2:185060/1‑149 (MQ=255) aaTTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGa > 7:80111/1‑115 (MQ=255) aaTTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGa < 8:80111/115‑1 (MQ=255) ttGTGCCTACCAAATCGAAAAAGGGCGATCAGAATTGATCGCCCTTTTTGCATTTGCGCGCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTgcgc < 4:298888/149‑1 (MQ=255) ccTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACTCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAAc < 1:146818/148‑1 (MQ=255) aCCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGc > 1:148317/1‑149 (MQ=255) aCCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGc > 3:230070/1‑149 (MQ=255) gcAAATGCAAAAAGGGCGATCATTTCTGATCGCCCTTTTTCCATTTCCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCt > 4:101227/2‑149 (MQ=38) ccAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcgcg < 8:43376/78‑1 (MQ=255) ccAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTcgcg > 7:43376/1‑78 (MQ=255) ccAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCAGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCCAAGTGGCt > 6:221993/1‑149 (MQ=255) aaTCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTgg > 1:70227/1‑121 (MQ=255) aaTCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTgg < 2:70227/121‑1 (MQ=255) aTCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTgg < 5:118872/149‑1 (MQ=255) aaaaaGGGCGATCATTTCTGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATGCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAAt > 7:222841/1‑149 (MQ=255) aaaaaGGGCGATCATTTCTGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATATGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAAt > 3:332514/1‑149 (MQ=255) aaaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGt > 4:116839/1‑120 (MQ=255) aaaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGt < 3:116839/120‑1 (MQ=255) aaaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAAt > 2:339703/1‑149 (MQ=255) aaaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAAt > 1:334340/1‑149 (MQ=255) aaaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATg > 3:289383/1‑149 (MQ=255) aaaGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATgg < 6:358286/149‑1 (MQ=255) gCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACCCGCGTGCGCAAACTGGCTGTGGTAATGGCAGTg > 4:5170/1‑149 (MQ=255) tCAGAAATGATCGCCCTTTTTCCATTTTAGAAAGAACCACCGTGTAACGTTAGGTCGCGGTCCGGGCATACCCCGGCGTGATAGAATCCGCACCTTCGAATATGGAGGTACACGCGTGCGCAAACTCGATGTGGTAATGTCACTGATCg > 4:70907/1‑149 (MQ=255) gAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTATTGGAAGTGCTAGccc > 6:353123/1‑149 (MQ=255) gAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAGTGCTCGccc < 4:230070/149‑1 (MQ=255) gAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAGTGCTCGccc < 6:364730/149‑1 (MQ=255) | GCTTTACAGGTACGCATCGGGCCACTAATATGCGCACCACACGACAGGCACATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCGAGTCCAATTGTGCCTACCAAATCGAAAAAGGGCGATCAGAAATGATCGCCCTTTTTGCATTTGCGCCCGAAGCAGCGTGTAACGTTTGGTCGCGGTCCGGGCATACCCCGGCGTGCTAGAATCCGCCCCTTCGAATCTGGAGGTACACGCGTGCGCAAACTGGCTGTGGTAATGGCAGTGCTCGCCC > NC_002947/2796695‑2796984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |