| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,189,278 | G→C | 8.9% | L458V (CTG→GTG) | PP_2799 ← | class III aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,189,278 | 0 | G | C | 8.9% | 176.5 / 7.2 | 56 | L458V (CTG→GTG) | PP_2799 | class III aminotransferase |
| Reads supporting (aligned to +/- strand): ref base G (28/23); new base C (2/3); total (30/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 | |||||||||||
CACTTGGGCCATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGATCAGCCCATGCTTGT > NC_002947/3189130‑3189424 | cacTTGGGCCATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCAcagcag > 4:47327/1‑149 (MQ=255)cacTTGGGCCATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCAcagcag > 4:47332/1‑149 (MQ=255) cTTGGGCCATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCAGGCACGGTCAAACCCGCATGATTGAAGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGt > 8:375932/1‑149 (MQ=255) ccATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt > 3:337138/1‑148 (MQ=255) tgatgGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGa < 4:110895/147‑1 (MQ=255) tgatgGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGa > 3:110895/1‑147 (MQ=255) tgatgGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAgc > 3:183432/1‑149 (MQ=255) tgGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAgcgcg > 5:92647/1‑149 (MQ=255) gTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTCGCTCACAGCACCTGCTGTGAgcaaagg < 8:24196/149‑6 (MQ=255) ccATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt < 3:126575/136‑1 (MQ=255) ccATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt > 4:126575/1‑136 (MQ=255) ccATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAAt < 2:352329/149‑1 (MQ=255) ccATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAAt > 4:74209/1‑149 (MQ=255) cATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt > 5:1941/1‑135 (MQ=255) cATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt < 6:1941/135‑1 (MQ=255) cATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATc > 6:323949/1‑149 (MQ=255) cATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCACCTGCTGTGa > 6:172967/1‑137 (MQ=255) cATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCACCTGCTGTGa < 5:172967/137‑1 (MQ=255) ccGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTcgcg > 3:205914/1‑149 (MQ=255) tCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt > 5:255390/1‑118 (MQ=255) tCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCtgt < 6:255390/118‑1 (MQ=255) aCGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTc > 4:204753/1‑149 (MQ=255) cGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTcc > 4:67348/1‑149 (MQ=255) cGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCg > 3:192606/1‑148 (MQ=255) tCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAg < 4:183432/149‑1 (MQ=255) gAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAgg < 3:67348/148‑1 (MQ=255) tCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCt > 3:14792/1‑148 (MQ=255) gAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGa < 7:393459/148‑1 (MQ=255) aaGCTTTCATCACTGTGTTCACGCACGGTCAACCCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAg < 3:47332/149‑1 (MQ=255) aaGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAg < 3:47327/149‑1 (MQ=255) catcaCTGTGTTCAAGCAGGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGGCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGcc < 7:375932/148‑1 (MQ=255) tCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTc < 4:205914/148‑1 (MQ=255) cacgcacgGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCt > 8:39032/1‑149 (MQ=255) acgcacgGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTg > 1:108467/1‑149 (MQ=255) cgGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGggtgg < 7:39032/149‑1 (MQ=255) tCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTaa > 3:142077/1‑149 (MQ=255) aCCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCaa > 7:234691/1‑149 (MQ=255) aCCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCaa < 8:93561/149‑1 (MQ=255) ccTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACg > 2:385062/1‑149 (MQ=255) cTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACgg > 8:26558/1‑149 (MQ=255) aTGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACgga < 4:14792/147‑1 (MQ=255) aTGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACgga < 8:234691/147‑1 (MQ=255) ttgttgTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACa < 2:108467/148‑1 (MQ=255) ttgttTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGaa < 1:385062/148‑1 (MQ=255) ttttACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGc > 8:100956/1‑148 (MQ=255) gTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCgtg < 4:192606/149‑1 (MQ=255) gTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGt < 4:337138/149‑1 (MQ=255) aTCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCTGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATgg > 6:400243/1‑149 (MQ=255) tCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTgg > 8:285167/1‑105 (MQ=255) cAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGgcg > 5:415633/1‑149 (MQ=255) ccTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGa < 1:320947/123‑1 (MQ=255) ccTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGa > 2:320947/1‑123 (MQ=255) gcgCTCACAGCACCTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTgg > 8:127676/3‑92 (MQ=255) gcgCTCACAGCACCTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTgg < 7:127676/90‑1 (MQ=255) cTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGATCAGCCCa < 3:74209/149‑1 (MQ=255) tCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGAt < 3:77083/141‑1 (MQ=255) tCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGAt > 4:77083/1‑141 (MQ=255) acaGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAATGCGATCGTGTAGTAGATGGCGCGAATGATCCGCCCCTGc > 8:388778/1‑149 (MQ=255) cagGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCTGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGATCAGCCCATGCTtgt < 5:400243/149‑1 (MQ=255) | CACTTGGGCCATGATGGTTCCCATGGCACCGAGCCCGATCACGGAAACGTCGAACTCGAAGCTTTCATCACTGTGTTCACGCACGGTCAAACCCTCATGATTGTTGTTTTACGTGAGTAGCCATCAGATGCAGCCTTTGCTCACAGCAGGTGCTGTGAGCGCGCCCAATCCGTCGCGTCAGCCAGCGTCCGCTCGAAGGCGCTGAAGATCGCCTCGATATCGTCCTGGGTGGTAATCAACGGAGGACAGAAGGCGATCGTGTCGTAGATGGCGCGAATGATCAGCCCATGCTTGT > NC_002947/3189130‑3189424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |