Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,391,522 | G→A | 8.3% | W244* (TGG→TGA) ‡ | PP_2994 → | FMN‑binding oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,391,522 | 0 | G | A | 8.3% | 176.6 / 4.1 | 60 | W244* (TGG→TGA) ‡ | PP_2994 | FMN‑binding oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (33/22); new base A (2/3); total (35/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.40e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGGAAAACCGGGCGCGCCTGTTGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGATCTCCAAACCGTCGCCAAAA > NC_002947/3391374‑3391670 | tGGAAAACCGGGCGCGCCTGTTGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTgg > 1:92833/1‑149 (MQ=255) gggCGCGCCTGTTGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGCCACTCAACGAc < 4:185328/149‑1 (MQ=255) gcgcCTGATGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCAGCCGATTTCCAGCGCTGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTgg < 5:240481/149‑1 (MQ=255) gTTGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGAGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCg > 1:236175/1‑146 (MQ=255) cTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACAt > 5:367006/1‑149 (MQ=255) cTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCAAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACAt > 5:422209/1‑149 (MQ=255) tCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGCCACTCAACGAcc < 8:380434/135‑1 (MQ=255) tCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGCCACTCAACGAcc > 7:380434/1‑135 (MQ=255) cGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACAtgg > 6:397231/1‑149 (MQ=255) aaaTCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACAtggtg > 6:244527/1‑149 (MQ=255) tCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGc < 6:317220/149‑1 (MQ=255) ggCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGCCACTCAACGACCtt > 4:332309/1‑114 (MQ=255) ggCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGCCACTCAACGACCtt < 3:332309/115‑2 (MQ=255) tttCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGa < 5:112354/124‑1 (MQ=255) tttCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGa > 6:112354/1‑124 (MQ=255) tCTGTGGATTTTGCGGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGAc > 6:137825/1‑114 (MQ=255) tCTGTGGATTTTGCGGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGAc < 5:137825/114‑1 (MQ=255) tgtgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCg > 3:224726/1‑149 (MQ=255) gtgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGc > 8:304602/1‑149 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAg < 4:116010/108‑1 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAg > 3:116010/1‑108 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAg > 6:13750/1‑141 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAg < 5:13750/141‑1 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGc > 8:89842/1‑148 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGc < 5:244527/148‑1 (MQ=255) tgGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGc < 2:236175/148‑1 (MQ=255) ttGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCa < 4:224726/148‑1 (MQ=255) gCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAgg < 7:304602/148‑1 (MQ=255) aGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTg < 6:367006/149‑1 (MQ=255) gCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATc < 5:222902/110‑1 (MQ=255) gCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATc > 6:222902/1‑110 (MQ=255) cAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCg < 3:100243/106‑1 (MQ=255) cAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCg > 4:100243/1‑106 (MQ=255) aaaCTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGAcgcgcgcg < 7:89842/148‑1 (MQ=255) aaaCTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGa > 4:338670/1‑149 (MQ=255) aactcaactcCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGa < 8:148573/107‑1 (MQ=255) actcaactcCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAgg > 4:407998/1‑134 (MQ=255) actcaactcCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAgg < 3:407998/134‑1 (MQ=255) tcaactcCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGt > 7:148757/1‑149 (MQ=255) tcaactcCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGt > 7:377319/1‑149 (MQ=255) ctcCGCCGATTTCCATCGCGGAGAGTTCAACACAGAAGACGCCAAAAAGGTCGTTGAGTAGCTAAACGACCTGAGCGTAGACATGGTGGAGTTATAGGTAGGCAGATACGAAGTAAACGAAATACAGGATGACGCGCGCTATGGTcac > 8:257558/1‑146 (MQ=255) cgccgATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCAccc > 2:396889/1‑149 (MQ=255) gccgATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCACCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCt > 2:521/1‑149 (MQ=255) ccgATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTg > 3:107514/1‑149 (MQ=255) cAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGa < 3:338670/149‑1 (MQ=255) cgcgGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCCCGAAGc < 8:377319/149‑1 (MQ=255) ttCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgt > 8:233835/1‑149 (MQ=255) caccacCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc < 6:287043/148‑1 (MQ=255) caccacCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc < 5:397231/148‑1 (MQ=255) accaccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGTTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc > 1:280206/1‑147 (MQ=255) accaccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc > 4:257716/1‑147 (MQ=255) ccaccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc < 4:10924/146‑1 (MQ=255) ccaccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTtcgtc > 3:10924/1‑146 (MQ=255) caccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGt < 7:66917/115‑1 (MQ=255) caccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGt > 8:66917/1‑115 (MQ=255) caccGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGt > 7:80770/1‑149 (MQ=255) aGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGccc > 8:364236/1‑149 (MQ=255) gcgAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGa > 5:184128/1‑149 (MQ=255) aaaaaGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGAtct > 5:107613/1‑149 (MQ=255) aaaaaGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGAtct > 3:299051/1‑149 (MQ=255) aaGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCACCGACATGCAGGGTGACTCGCGCGATGGTCGCACCCTGGCTAGAGAAGCTAATTTCGTCGAGTTCGCCCGTGAtctgc > 6:77461/1‑146 (MQ=255) gCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACTCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGATCTCCAAACCGTCGCCaaaa > 8:125159/1‑149 (MQ=255) | TGGAAAACCGGGCGCGCCTGTTGCTCGAAATCGTCAAGGCGGTCCGGGCCGTGGTTTCTGTGGATTTTGCAGTGGCGGTCAAACTCAACTCCGCCGATTTCCAGCGCGGAGGGTTCACCACCGAAGACGCGAAAAAGGTCGTTGAGTGGCTCAACGACCTGGGCGTAGACATGGTGGAGTTATCGGGAGGCAGCTACGAAGTCCCCGCCATGCAGGGTGACGCGCGCGATGGTCGCACCCTGGCTCGCGAAGCTTATTTCGTCGAGTTCGCCCGTGATCTCCAAACCGTCGCCAAAA > NC_002947/3391374‑3391670 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |