| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,480,155 | A→G | 5.5% | L355P (CTG→CCG) | PP_3090 ← | OmpA domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,480,155 | 0 | A | G | 5.5% | 216.7 / 2.0 | 73 | L355P (CTG→CCG) | PP_3090 | OmpA domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (34/35); new base G (2/2); total (36/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.96e-01 | |||||||||||
TGCCCGTACCTTCTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAACGCGTCAGCTCGTC > NC_002947/3480009‑3480303 | tGCCCGTACCTTCTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGACCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAgg > 6:334757/1‑149 (MQ=255) gCCCGTACCTTCTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGc > 7:90586/1‑149 (MQ=255) cccGTACCTTCTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCt < 7:242897/149‑1 (MQ=255) cTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGaa < 2:176222/148‑1 (MQ=255) cGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGa < 7:378876/149‑1 (MQ=255) gAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAgg < 2:349110/148‑1 (MQ=255) gAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGgc > 2:318671/1‑149 (MQ=255) gAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTg < 7:22790/135‑1 (MQ=255) gAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTg > 8:22790/1‑135 (MQ=255) aaGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCtt > 4:114574/1‑149 (MQ=255) aaGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCtt > 4:390642/1‑149 (MQ=255) aGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTg < 1:59299/149‑1 (MQ=255) gCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGa < 3:114574/149‑1 (MQ=255) gCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGc > 3:369712/1‑149 (MQ=255) aTGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCa > 5:142746/1‑125 (MQ=255) aTGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCa < 6:142746/125‑1 (MQ=255) tGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTcgac > 7:267102/1‑113 (MQ=255) tGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTcgac < 8:267102/113‑1 (MQ=255) tGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTc < 4:280741/149‑1 (MQ=255) tGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAg > 6:274209/1‑149 (MQ=255) tGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAg > 2:175730/1‑149 (MQ=255) gTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGa < 4:369712/149‑1 (MQ=255) cccACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGaa < 3:59685/142‑1 (MQ=255) cccACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGaa > 4:59685/1‑142 (MQ=255) cccACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAg > 4:278070/1‑149 (MQ=255) ccACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAAGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAg > 1:95679/1‑149 (MQ=255) cACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAGAAGGTTTGCCACGCAGCAGGATGTCGACCAAATGATGCAGGCGCGGATTGAGCGGGGCCAGCACCAGCGGGAA‑GCgg > 1:332606/1‑147 (MQ=255) aCTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAgg > 4:74745/1‑147 (MQ=255) cTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGaa < 1:271545/96‑1 (MQ=255) cTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGaa > 2:271545/1‑96 (MQ=255) gCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGcgtc < 3:390642/149‑1 (MQ=255) gCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGcgtc < 5:274209/149‑1 (MQ=255) cgtcgGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTc > 8:13608/1‑149 (MQ=255) ggCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTccgcc < 3:278070/149‑1 (MQ=255) ccTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCgg < 6:88206/149‑1 (MQ=255) ccTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCgg < 6:82302/149‑1 (MQ=255) cTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCGGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCggg > 1:179387/1‑149 (MQ=255) cTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCGGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCggg > 1:173157/1‑149 (MQ=255) aGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCGGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGAc < 2:173157/149‑1 (MQ=255) aGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCGGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGAc < 2:179387/149‑1 (MQ=255) aGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGAc > 2:347718/1‑149 (MQ=255) cgGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATg < 7:13608/149‑1 (MQ=255) aaaTAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctg > 6:358790/1‑149 (MQ=255) aTAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctgct > 8:20829/1‑149 (MQ=255) tAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctgctg > 1:37143/1‑149 (MQ=255) tAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctgctg > 8:118762/1‑149 (MQ=255) gAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCa > 4:68803/1‑149 (MQ=255) aaaCCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCAc > 5:268195/1‑149 (MQ=255) aaCCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCAcc < 8:171989/149‑1 (MQ=255) ccGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAg < 1:175730/149‑1 (MQ=255) gc‑agcaTTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAgctgc < 1:347718/149‑1 (MQ=255) gcaTTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGGCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTgg < 8:90586/149‑1 (MQ=255) caTTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAACCCGGTAGGCAGCGTCGCTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTgg < 1:318671/149‑1 (MQ=255) tttCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTc > 6:380164/1‑149 (MQ=255) tttCGGCATTCTGGTAAG‑‑GG‑TTGACACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTc > 3:363445/1‑149 (MQ=255) cGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctgct < 6:183175/129‑1 (MQ=255) cGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCctgct > 5:183175/1‑129 (MQ=255) cGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCCTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGc < 3:74745/148‑1 (MQ=255) cATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATc < 2:37143/149‑1 (MQ=255) aTTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTa < 5:33671/87‑1 (MQ=255) aTTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTa > 6:33671/1‑87 (MQ=255) aTTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCt < 7:118762/149‑1 (MQ=255) gTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGcccc > 2:360392/1‑148 (MQ=255) gTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGcc < 2:332606/146‑1 (MQ=255) aaG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGt > 8:68641/1‑107 (MQ=255) aaG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGt < 7:68641/107‑1 (MQ=255) aG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGt > 6:115636/1‑99 (MQ=255) aG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGt < 5:115636/99‑1 (MQ=255) aG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAg < 3:68803/148‑1 (MQ=255) ttGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAAcg > 1:202974/1‑149 (MQ=255) gCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGctgctg > 7:379772/1‑122 (MQ=255) gCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGctgctg < 8:379772/122‑1 (MQ=255) aCGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAACGCGTCa < 2:95679/149‑1 (MQ=255) gcagcaGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGcc < 4:215266/132‑1 (MQ=255) gcagcaGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGcc > 3:215266/1‑132 (MQ=255) gcagcaGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAACGCGTCAGc > 7:11218/1‑149 (MQ=255) agGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTa > 3:211627/1‑91 (MQ=255) agGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTa < 4:211627/91‑1 (MQ=255) agGCCGTCGACGAACTGATGCACGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGGTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAACGCGTCAGCTCGTc < 2:141147/149‑1 (MQ=255) | TGCCCGTACCTTCTGCGTGTTCGAGCGCGAAGCGTTCGGCCACATGCTGGCCGTGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGC‑AGCATTTCGGCATTCTGGTAAG‑‑GG‑TTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCGGGAA‑GCGGTAGGCAGCGTCGTTCCGCCGGGTGACTTGTATGTCCTGCTGCACCAGCTGCTGGCTCGCCATCTGCCCCCAGTAACGCGTCAGCTCGTC > NC_002947/3480009‑3480303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |