Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,711,461 | T→C | 7.0% | E77G (GAG→GGG) | paaC ← | ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,711,461 | 0 | T | C | 7.0% | 162.6 / 2.2 | 57 | E77G (GAG→GGG) | paaC | ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta |
Reads supporting (aligned to +/- strand): ref base T (28/25); new base C (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01 |
GGCAATCCCCGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCA > NC_002947/3711313‑3711607 | ggcAATCCCCGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCt > 4:229942/1‑149 (MQ=255) gcAATCCCCGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTc < 6:286547/149‑1 (MQ=255) cccGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGTAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCag < 1:373126/148‑2 (MQ=255) cccGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGAGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCAcg > 2:238207/1‑149 (MQ=255) cgATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCAcggcgg < 1:177696/149‑1 (MQ=255) ttCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAAc < 3:229942/149‑1 (MQ=255) ttCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGCTGCGGTAGGCGCGCTCGTCACGGCGGAAc < 1:238207/149‑1 (MQ=255) gcgcATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGc > 4:93427/1‑148 (MQ=255) cgcATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCa < 3:93427/149‑1 (MQ=255) gACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcgg < 5:329444/148‑1 (MQ=255) cTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcggcat > 8:179888/1‑149 (MQ=255) tCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATAACCGTTGGGTTGCTCGACCAGCAGCAGGTAGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcggcatc > 6:62746/1‑149 (MQ=255) gACCAACCGCTGCAGCACGGCGAAGTGCCAGGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGTTTGCTCGACCAGCAGCAGGTTGCTGTAGGCGCGCTCGGCACGGCGGAACGCCAGGGCATCGGCAtctc < 4:180296/149‑1 (MQ=255) cagcaCGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGa < 7:179888/149‑1 (MQ=255) cGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGagcagc < 7:373887/149‑1 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa > 3:13732/1‑148 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCCCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc > 4:364839/1‑147 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCCCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc > 4:370979/1‑147 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCCCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc < 3:370979/147‑1 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCCCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc < 3:364839/147‑1 (MQ=255) gtcgtAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCAtc > 1:10886/1‑123 (MQ=255) gtcgtAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCAtc < 2:10886/123‑1 (MQ=255) agagGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCg > 2:140740/1‑112 (MQ=255) agGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTccagccag < 4:70691/147‑1 (MQ=255) agGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTccagccag > 3:70691/1‑147 (MQ=255) cTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa < 6:223063/127‑1 (MQ=255) cTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa > 5:223063/1‑127 (MQ=255) tcatggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGcc > 6:417928/1‑148 (MQ=255) ggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc > 6:144059/1‑117 (MQ=255) ggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc < 5:144059/117‑1 (MQ=255) ggCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcggc > 4:290313/1‑81 (MQ=255) ggCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcggc < 3:290313/81‑1 (MQ=255) cAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAgg < 5:417928/149‑1 (MQ=255) aaaaTCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGc < 3:32008/149‑1 (MQ=255) tCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGAc > 6:157742/1‑149 (MQ=255) ttGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATGCTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAg > 6:121656/1‑137 (MQ=255) ttGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATGCTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAg < 5:121656/137‑1 (MQ=255) ggTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGTCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAg < 5:62746/149‑1 (MQ=255) ggTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTtcat > 4:93031/1‑146 (MQ=255) ggTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTtcat < 3:93031/146‑1 (MQ=255) cTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTAGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGc > 5:344435/1‑147 (MQ=255) tCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAg > 5:74586/1‑149 (MQ=255) ccAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGctct > 4:391537/1‑149 (MQ=255) ccAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGctct > 4:296768/1‑149 (MQ=255) cagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGa > 3:376344/1‑149 (MQ=255) cagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGA‑CAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGAt < 4:13732/149‑1 (MQ=255) gTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATgg > 5:159256/1‑149 (MQ=255) ttGCGGAAGGCGCGCTCGTCAAGGCGGAACGCCAGGGCATAGGCATCTCGGACATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTAGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCATCGATGGc > 1:9328/1‑149 (MQ=255) cGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGcgaa < 4:376344/149‑4 (MQ=255) cGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCgg < 5:157742/149‑1 (MQ=255) gTAGGCGCGCTCGTCACGGTGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCgggg > 8:358330/1‑149 (MQ=255) gTAGGCGAGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCgggg > 2:396795/1‑149 (MQ=255) gcgcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACg > 1:38538/1‑149 (MQ=255) cgcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCTAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACgg < 2:9328/149‑1 (MQ=255) gcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGTGCCCCGGCca > 2:20641/1‑149 (MQ=255) gcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCca > 8:166112/1‑149 (MQ=255) cTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGc > 2:355955/1‑117 (MQ=255) cTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGc < 1:355955/117‑1 (MQ=255) | GGCAATCCCCGCGATTCGCGCATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCA > NC_002947/3711313‑3711607 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |