Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,757,049 | C→A | 7.1% | Q22H (CAG→CAT) | PP_3320 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,757,049 | 0 | C | A | 7.1% | 177.3 / 4.0 | 56 | Q22H (CAG→CAT) | PP_3320 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (26/26); new base A (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.33e-01 |
GCCAGCACGATATGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGATGTTATGTTATAACACT > NC_002947/3756901‑3757196 | gCCAGCACGATATGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCATTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCAtgc > 8:155268/1‑149 (MQ=255) cACGATATGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGctgctg < 1:21785/149‑1 (MQ=255) atatGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCAGCATGACATCGGCGAAGTCCTGATGCTggcct < 3:219203/149‑4 (MQ=38) tGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATg < 4:63004/149‑1 (MQ=255) gCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTGTTCGTTCATCCAGGCCTGCATCAGGAGTTCGCCGATGTCATGCAGCGGAGTGATgg > 4:353364/1‑149 (MQ=255) aCATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCggg > 5:158079/1‑149 (MQ=255) aCATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCgg < 1:246627/148‑1 (MQ=255) cccTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAg > 8:18360/1‑149 (MQ=255) ccTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGc > 4:124518/1‑149 (MQ=255) cacaTCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAggggg > 8:154283/1‑149 (MQ=255) tCCCTTTTTTCATAACGCAACAACCGCCCATATTTGCTGAGCACCTGAAATGT‑CTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCa < 2:136348/149‑1 (MQ=255) cccGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTccg > 8:338092/1‑148 (MQ=255) ccGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAg < 7:154283/149‑1 (MQ=255) ccGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAg < 6:158079/149‑1 (MQ=255) gTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAggg > 6:317157/1‑149 (MQ=255) ttGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAg > 3:162927/1‑145 (MQ=255) ttGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAg < 4:162927/145‑1 (MQ=255) aaCGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCgg < 6:38739/115‑1 (MQ=255) aaCGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCg < 5:130187/149‑1 (MQ=255) gTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAg > 2:32704/1‑149 (MQ=255) ccAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATc > 3:235138/1‑106 (MQ=255) ccAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATc < 4:235138/106‑1 (MQ=255) agagTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTc < 7:319157/119‑1 (MQ=255) agagTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTc > 8:319157/1‑119 (MQ=255) agagTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAg < 7:18360/149‑1 (MQ=255) gTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGc > 1:30684/1‑148 (MQ=255) gAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGaa < 4:239334/126‑1 (MQ=255) gAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGaa > 3:239334/1‑126 (MQ=255) aGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCgg < 2:30684/148‑1 (MQ=255) aGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGTTCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCg < 7:27127/141‑1 (MQ=255) aGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCg > 8:27127/1‑141 (MQ=255) tACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGc > 7:357068/1‑149 (MQ=255) cTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAg > 1:349301/1‑124 (MQ=255) cTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAg < 2:349301/124‑1 (MQ=255) tGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTg > 8:152701/1‑149 (MQ=255) tGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCA‑GGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAg < 4:346940/122‑1 (MQ=255) tGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCA‑GGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAg > 3:346940/1‑122 (MQ=255) acgaagcGCCTTTTCGTGAAGCCAGCCCCGCACCAGGACTTCGCCCATGTCAGGCTCCTGGGGGAGGGCGGGCTTCCGCCCCAGGGGGTTCC‑GGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGc < 7:338092/143‑1 (MQ=255) aaGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATc < 8:293440/76‑1 (MQ=255) aaGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATc > 7:293440/1‑76 (MQ=255) cagcGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCaa < 2:283829/149‑1 (MQ=255) gcgcCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAgg < 2:30819/149‑1 (MQ=255) ttCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACAt > 5:133584/1‑149 (MQ=255) tCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGAtt < 1:32704/149‑1 (MQ=255) ccAGCAGCATGACATCGGCGAAGTCCTGATGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGAtt > 8:269751/1‑143 (MQ=38) ccAGCAGCATGACATCGGCGAAGTCCTGATGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGAtt < 7:269751/143‑1 (MQ=38) ccAGCAGCATGACATCGGCGAAGTCCTGATGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAAc > 6:425291/1‑149 (MQ=39) cAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCt > 4:331610/1‑119 (MQ=255) cAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCt < 3:331610/119‑1 (MQ=255) cAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAAcc > 4:200181/1‑149 (MQ=255) tCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGAtt > 4:313759/1‑137 (MQ=255) tCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGAtt < 3:313759/137‑1 (MQ=255) ttCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTaa < 1:37676/119‑1 (MQ=255) ttCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTaa > 2:37676/1‑119 (MQ=255) gATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGatgttatgtt < 3:124518/149‑1 (MQ=255) aTGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGAtgttatgtta < 6:161375/144‑1 (MQ=255) aTGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGAtgttatgtta > 5:161375/1‑144 (MQ=255) aTGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGATGTTATGTTATAac > 4:23089/1‑148 (MQ=255) ctgctgGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACTTCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGATGTTATGTTATAACACt > 5:94984/1‑148 (MQ=255) | GCCAGCACGATATGCTGACATTTCCCTCTTCTCCACATCCCGTTTGTCATAACGTAACAAGCGCCCAGAGTTGCTGAGCACCAGCAATGTACTGAAGCAGCGCCTTTTCGTTCATCCAGGCCAGCATCAGGACTTCGCCGATGTCATGCTGCTGGGTGATGGCGGGGATCAGCCCCAGGGGGTTCCAGGGTATGTGGCGAAGCACATCGGTCAAGGCGAAGCGGCTTCCCGCCTGTGCCTGCTCAAGGGTAAGGAACATGATTTGCAACCTGCGATAGATGTTATGTTATAACACT > NC_002947/3756901‑3757196 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |