| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,869,858 | T→G | 6.7% | E354A (GAG→GCG) ‡ | PP_3419 ← | sigma‑54 dependent transcriptional regulator/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,869,858 | 0 | T | G | 6.7% | 218.7 / 5.4 | 72 | E354A (GAG→GCG) ‡ | PP_3419 | sigma‑54 dependent transcriptional regulator/response regulator |
| Reads supporting (aligned to +/- strand): ref base T (35/32); new base G (3/2); total (38/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
CAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869710‑3870005 | cAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTtcggcct > 8:34429/1‑149 (MQ=255) aCGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTtcggcctcg < 1:240774/149‑1 (MQ=255) gCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTtcggcctcggcc < 2:406442/149‑1 (MQ=255) tCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACAACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCATTCGGCCTCGGCCg > 5:412755/1‑148 (MQ=255) gTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGCGCAGCAGCCTTTCGGCCTCGGCCgca > 2:9036/1‑146 (MQ=255) gTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGa < 1:282424/147‑1 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTtcggcctcgg < 5:120391/140‑1 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTtcggcctcgg > 6:120391/1‑140 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGaaagc < 1:273386/148‑3 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGAACCACCTCGATCGCCGCCAGCACCACAGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCGGGCTTTCGGCCTCGGACGaaaacc > 6:188110/1‑147 (MQ=255) aCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTACGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTAACGCACATTGCCAGCCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCCGCCGAAAAccg > 3:246904/1‑149 (MQ=255) ccAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAgcgc < 1:9036/149‑1 (MQ=255) aaGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAg > 4:181129/1‑149 (MQ=255) aGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAgg > 7:68915/1‑149 (MQ=255) tCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTc > 5:65141/1‑149 (MQ=255) aTGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCgg > 5:95245/1‑149 (MQ=255) acaGGTTCAACTGATGCGCTTGCACCACCTCGTTCCGCGCCAGCAACACCGTCTGCTCCAGCATGGTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCCAGCAGCAGGCTTGCGGCCTCTGCCGAAAAGCGCAGGTTCGGCTTg < 1:361416/149‑1 (MQ=255) aGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGcc < 7:34429/149‑1 (MQ=255) gTTCTACTGATGCGCTTTCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCAt < 4:246904/149‑1 (MQ=255) aCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc < 8:68915/149‑1 (MQ=255) aCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc > 7:334278/1‑149 (MQ=255) tGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCGAGGCCGaaagc < 8:96664/123‑3 (MQ=255) tGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCGAGGCCGaaagc > 7:96664/1‑121 (MQ=255) cgcTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAt > 4:313285/1‑149 (MQ=255) gcTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCGAGGCCGaaag > 5:316856/1‑115 (MQ=255) gcTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCGAGGCCGaaag < 6:316856/116‑2 (MQ=255) cTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtgg > 5:67953/1‑149 (MQ=255) caccacCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGaa < 2:83299/109‑1 (MQ=255) caccacCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGaa > 1:83299/1‑109 (MQ=255) ccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAgg < 3:276294/149‑1 (MQ=255) gcgcCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCa < 3:35971/102‑1 (MQ=255) gcgcCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCa > 4:35971/1‑102 (MQ=255) ccAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGcc < 6:65141/149‑1 (MQ=255) acCGTCTGCTACAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGTCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAg < 5:188110/149‑1 (MQ=255) gTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGAt < 6:67953/149‑1 (MQ=255) tCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATg > 2:206676/1‑149 (MQ=255) aGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGcc > 4:49384/1‑148 (MQ=255) cATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCAc > 6:317640/1‑149 (MQ=255) aTGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCAcg > 5:285791/1‑149 (MQ=255) aTGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCAcg < 3:49384/149‑1 (MQ=255) cgcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAg > 7:103332/1‑128 (MQ=255) cgcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAg < 8:103332/128‑1 (MQ=255) aaTTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACat > 1:365035/1‑148 (MQ=255) aaTTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAg > 2:355958/1‑149 (MQ=255) ttCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCTAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGgc < 7:78512/149‑1 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAgg < 6:254317/121‑1 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAgg > 5:254317/1‑121 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGcgcg > 4:96646/1‑149 (MQ=255) aCGCAAATTGCCAAGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGgcgc < 1:182336/148‑1 (MQ=255) gCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTc > 3:137301/1‑124 (MQ=255) gCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTc < 4:137301/124‑1 (MQ=255) cacaTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCa < 3:181129/149‑1 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGAt > 4:335969/1‑119 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGAt < 3:335969/119‑1 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAc > 7:162218/1‑149 (MQ=255) aTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGt > 4:283518/1‑119 (MQ=255) aTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATAc > 6:189295/1‑136 (MQ=255) aTTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATAc < 5:189295/136‑1 (MQ=255) ccaggccagCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGt < 5:303848/115‑1 (MQ=255) ccaggccagCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGt > 6:303848/1‑115 (MQ=255) gccagCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCg < 3:313285/149‑1 (MQ=255) taACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGc < 1:206676/148‑1 (MQ=255) aaCCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCg > 4:369726/1‑148 (MQ=255) cGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGcc < 8:319830/86‑1 (MQ=255) cGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGcc > 7:319830/1‑86 (MQ=255) gcgcttttCGGCCGAGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaag > 6:305648/6‑148 (MQ=255) cagGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAgg > 1:133847/1‑88 (MQ=255) cagGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAgg < 2:133847/88‑1 (MQ=255) cagGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg < 7:294104/117‑1 (MQ=255) cagGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg > 8:294104/1‑117 (MQ=255) cagGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaag > 2:254468/1‑148 (MQ=255) cTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAg < 3:96646/149‑1 (MQ=255) cTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAg < 5:317640/149‑1 (MQ=255) tttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCa < 2:136143/95‑1 (MQ=255) tttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGc > 2:94142/1‑113 (MQ=255) tttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGc < 1:94142/113‑1 (MQ=255) tttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAgg > 3:133347/1‑149 (MQ=255) ggcctcggccTAAAAGCGCAGGATCGTCTGGCCATAGCGCCGGCTATGGGGGGCAAGGAAAAGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGTCGCGGCACCTTCAGGGCTATAATGCGAAGGCGGAAGAACAGTTCAc < 6:412755/149‑1 (MQ=255) ctcggccGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGcc > 7:368476/1‑149 (MQ=255) | CAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869710‑3870005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |