Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,908,416 | A→G | 6.9% | N122S (AAC→AGC) | PP_3450 → | TPR repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,908,416 | 0 | A | G | 6.9% | 162.0 / 2.1 | 58 | N122S (AAC→AGC) | PP_3450 | TPR repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (29/25); new base G (2/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAG > NC_002947/3908276‑3908563 | cacaGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGGCGCGGTTGGCCATGGCCAGCcgcgtct < 8:305254/149‑4 (MQ=255) aGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTc < 3:362619/149‑1 (MQ=255) cAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGccaccac > 2:46446/1‑147 (MQ=255) ggACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACcag > 1:410704/1‑148 (MQ=255) cTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCAtt > 2:224645/1‑127 (MQ=255) cTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCAtt < 1:224645/127‑1 (MQ=255) gCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCGACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGTTGGCCATGGCCAGCcgcg > 4:1013/1‑119 (MQ=255) gCAACGCCTGGCCAATCCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGTTGGCCATGGCCAGCcgcg < 3:1013/119‑1 (MQ=255) aaCGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCACTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGccc > 1:84660/1‑148 (MQ=255) aCGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAAc < 3:81385/149‑1 (MQ=255) gCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctggct < 2:410704/149‑1 (MQ=255) gCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctgg < 1:46446/147‑1 (MQ=255) gCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctgg < 6:332029/147‑1 (MQ=255) cAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctggc < 5:244750/146‑1 (MQ=255) cAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctggc > 6:244750/1‑146 (MQ=255) aaTGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctggctg > 5:318683/1‑147 (MQ=255) gCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTc > 2:360787/1‑149 (MQ=255) ccTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTAGCCTTGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTc < 2:371720/148‑1 (MQ=255) tataTCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGc > 5:387790/1‑148 (MQ=255) ccAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGcc > 6:10883/1‑124 (MQ=255) ccAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGcc < 5:10883/124‑1 (MQ=255) cAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGcc < 8:326093/109‑1 (MQ=255) cAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGcc > 7:326093/1‑109 (MQ=255) cAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGcc < 6:387790/149‑1 (MQ=255) gCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTg < 1:360787/149‑1 (MQ=255) acgaAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTg > 8:182/1‑149 (MQ=255) gaAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGCTCAACTgcc > 3:81100/1‑148 (MQ=255) c‑cTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgca > 6:168883/1‑141 (MQ=255) c‑cTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgca < 5:168883/141‑1 (MQ=255) aCTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGagc < 5:171901/148‑1 (MQ=255) ctgGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGc < 6:318683/148‑1 (MQ=255) gCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACCCTCGCTGCAGTCGCTACCGCCAGATCAACTGCAGCAACCCGAACAGCGCCAGCAACt > 2:193679/1‑149 (MQ=255) ccACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACttt > 6:336811/1‑149 (MQ=255) ccACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACttt < 2:72469/149‑1 (MQ=255) cACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTg > 4:317215/1‑149 (MQ=255) cACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTg < 2:84660/149‑1 (MQ=255) aCGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTgg < 2:221595/149‑1 (MQ=255) cTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgca < 3:195684/114‑1 (MQ=255) cTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgca > 4:195684/1‑114 (MQ=255) ccccGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAAc > 4:6022/1‑116 (MQ=255) ccGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCcgc > 7:379340/1‑149 (MQ=255) ccGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCcgc > 5:2508/1‑149 (MQ=255) gCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGcc > 4:15165/1‑42 (MQ=255) gCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGcc < 3:15165/42‑1 (MQ=255) gCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGcga < 7:182/149‑1 (MQ=255) cAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctg < 5:211068/69‑1 (MQ=255) cAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGACGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGcgac > 1:268961/1‑148 (MQ=255) cAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGACGTCGGCCACCACCAGCAGGCCCAACgctg > 6:211068/1‑69 (MQ=255) ccAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGGAACTGGCCCGCGAAGGCGACGATg > 7:281978/1‑149 (MQ=255) cgcgGTTGGCCATGGCCAGCCGCGTCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCAGCGAAGGCGACGATGCAgcg > 4:68850/1‑149 (MQ=255) gcgGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGc > 5:357210/1‑144 (MQ=255) gcgGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGc < 6:357210/144‑1 (MQ=255) gCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTgg > 4:340057/1‑149 (MQ=255) tggccatggccaACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTgg > 4:287729/1‑113 (MQ=255) tggccatggccaACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTgg < 3:287729/113‑1 (MQ=255) ccatggccaACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTgcgg > 1:236726/1‑149 (MQ=255) ccaACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTgcggcgagat > 3:59635/1‑145 (MQ=255) ccaACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTgcggc < 4:59635/144‑1 (MQ=255) aaCCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCt > 4:343513/1‑146 (MQ=255) aaCCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGa < 3:343513/148‑1 (MQ=255) aaCCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAg > 3:151605/1‑149 (MQ=255) | CACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGC‑CTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAG > NC_002947/3908276‑3908563 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |