Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,065,982 C→G 10.5% D1028H (GAC→CAC)  mdtC ← multidrug transporter membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,065,9820CG10.5% 165.3 / 5.9 55D1028H (GAC→CAC) mdtCmultidrug transporter membrane protein
Reads supporting (aligned to +/- strand):  ref base C (23/26);  new base G (3/3);  total (26/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTAGTCGGGGCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGC  >  NC_002947/4065834‑4066128
                                                                                                                                                    |                                                                                                                                                    
gtAGTCGGGGCTCAGTGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTc                                                                                                                                                      >  6:133426/1‑149 (MQ=255)
       gggCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTacg                                                                                                                                                >  8:170734/1‑148 (MQ=255)
           tCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTaccgacgc                                                                                                                                           >  7:193875/1‑149 (MQ=255)
                 tACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgccgctct                                                                                                                                    <  8:193875/149‑4 (MQ=255)
                    aGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAAc                                                                                                                                 >  2:381397/1‑149 (MQ=255)
                    aGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGAGGCGTCGGTACGCACGCCTCGCCAAc                                                                                                                                 >  6:257830/1‑149 (MQ=255)
                      gCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACgg                                                                                                                               >  3:337246/1‑149 (MQ=255)
                        aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACgg                                                                                                                               <  6:199379/147‑1 (MQ=255)
                        aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACgg                                                                                                                               >  5:199379/1‑147 (MQ=255)
                        aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGtt                                                                                                                             <  5:133426/149‑1 (MQ=255)
                             gCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAAc                                                                                                                        <  7:170734/149‑1 (MQ=255)
                                aGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGt                                                                                                                     >  8:255805/1‑149 (MQ=255)
                                 ggCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTg                                                                                                                    >  1:70031/1‑149 (MQ=255)
                                           aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgccgct                                                                                                                                      <  3:103436/121‑2 (MQ=255)
                                           aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgccgct                                                                                                                                      >  4:103436/1‑120 (MQ=255)
                                           aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGGCATAGCGGGGTTTCCAGAGCGGCGGCGGTACGCACGCCTGCGCCACCGTTTCAACCGTTGgcgcggcgt                                                                                                           <  7:161852/149‑6 (MQ=38)
                                             cccGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTc                                                                                                        <  2:70031/149‑1 (MQ=255)
                                                ggCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcag                                                                                                     <  4:337246/149‑1 (MQ=255)
                                                ggCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcag                                                                                                     >  1:42516/1‑149 (MQ=255)
                                                 gCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcagg                                                                                                    <  3:156037/149‑1 (MQ=255)
                                                    ccGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGGCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtac                                                                                                 <  6:417330/149‑1 (MQ=255)
                                                     cGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtaca                                                                                                <  1:381397/149‑1 (MQ=255)
                                                      gAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacag                                                                                               <  5:200794/149‑1 (MQ=255)
                                                      gAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacag                                                                                               <  5:179648/149‑1 (MQ=255)
                                                       aGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacagg                                                                                              >  2:292239/1‑149 (MQ=255)
                                                              gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGtt                                                                                                                             <  6:342199/111‑1 (MQ=255)
                                                              gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGtt                                                                                                                             >  5:342199/1‑111 (MQ=255)
                                                              gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAacca                                                                                       >  5:315077/1‑149 (MQ=255)
                                                                 aGCCACGCCCACGGTTCAGTGGTTGCCGGGCACGGTGAAGTGGGGTCTGGCCAAAAGTCATACCGGGGTTTCCAGAGCGGCGTCGGTACGAACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCg                                                                                    <  5:257830/149‑1 (MQ=255)
                                                                    cacggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcg                                                                                 >  3:250576/1‑149 (MQ=255)
                                                                     acggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgt                                                                                >  7:197030/1‑149 (MQ=255)
                                                                         ccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta                                                                            >  3:23392/1‑149 (MQ=255)
                                                                                   gTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGa                                                                  <  4:250576/149‑1 (MQ=255)
                                                                                         gCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtc                                                                               <  3:267834/130‑1 (MQ=255)
                                                                                         gCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtc                                                                               >  4:267834/1‑130 (MQ=255)
                                                                                           aGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTgg                                                          <  7:255805/149‑1 (MQ=255)
                                                                                             ggCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCt                                                        <  7:151760/149‑1 (MQ=255)
                                                                                                aCGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGaa                                                     <  5:114925/149‑1 (MQ=255)
                                                                                                  ggTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAaca                                                   >  3:205669/1‑149 (MQ=255)
                                                                                                      aaGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAg                                              <  4:23392/149‑1 (MQ=255)
                                                                                                             gTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCAcc                                        >  5:369450/1‑148 (MQ=255)
                                                                                                             gTCTGGGCAAAAGTCATAGAGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCAcc                                        >  4:387345/1‑148 (MQ=255)
                                                                                                                   gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCgatg                                    <  4:298699/146‑1 (MQ=255)
                                                                                                                   gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCgatg                                    >  3:298699/1‑146 (MQ=255)
                                                                                                                   gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGACGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGatgatg                                 >  1:44794/1‑149 (MQ=255)
                                                                                                                     aaaaGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGt                               >  6:54190/1‑149 (MQ=255)
                                                                                                                       aaGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGt                               >  4:385437/1‑147 (MQ=255)
                                                                                                                         gTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAgg                           <  5:54190/149‑1 (MQ=255)
                                                                                                                         gTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAgg                           <  4:205669/149‑1 (MQ=255)
                                                                                                                               gCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAg                      <  6:369450/148‑1 (MQ=255)
                                                                                                                               gCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGc                     >  1:155360/1‑149 (MQ=255)
                                                                                                                                          ggcgcggcgTGCGTACCGACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta                                                                            >  1:152032/4‑84 (MQ=38)
                                                                                                                                          ggcgcggcgTGCGTACCGACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta                                                                            <  2:152032/81‑1 (MQ=38)
                                                                                                                                              cggcgTCGGTACGCACGGCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCt      <  8:197030/149‑1 (MQ=255)
                                                                                                                                                 cgTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgc    <  1:292239/149‑1 (MQ=255)
                                                                                                                                                  gTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgcgc  <  3:387345/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTAGTCGGGGCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGC  >  NC_002947/4065834‑4066128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: