Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,065,988 | G→C | 9.3% | R1026G (CGT→GGT) | mdtC ← | multidrug transporter membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,065,988 | 0 | G | C | 9.3% | 154.5 / 8.0 | 54 | R1026G (CGT→GGT) | mdtC | multidrug transporter membrane protein |
Reads supporting (aligned to +/- strand): ref base G (23/26); new base C (2/3); total (25/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.18e-01 |
GGGCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTT > NC_002947/4065841‑4066131 | gggCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTacg > 8:170734/1‑148 (MQ=255) tCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTaccgacgc > 7:193875/1‑149 (MQ=255) tACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgcc‑gctct < 8:193875/149‑4 (MQ=255) aGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAAc > 2:381397/1‑149 (MQ=255) aGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGAGGCGTCGGTACGCACGCC‑TCGCCAAc > 6:257830/1‑149 (MQ=255) gCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACgg > 3:337246/1‑149 (MQ=255) aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACgg < 6:199379/147‑1 (MQ=255) aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACgg > 5:199379/1‑147 (MQ=255) aCTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGtt < 5:133426/149‑1 (MQ=255) gCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAAc < 7:170734/149‑1 (MQ=255) aGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGt > 8:255805/1‑149 (MQ=255) ggCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTg > 1:70031/1‑149 (MQ=255) aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgcc‑gct > 4:103436/1‑120 (MQ=255) aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTGCGTACCGAcgcc‑gct < 3:103436/121‑2 (MQ=255) aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGGCATAGCGGGGTTTCCAGAGCGGCGGCGGTACGCACGCCTGCGCCACCGTTTCAACCGTTGgcgcggcgt < 7:161852/149‑6 (MQ=38) cccGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTc < 2:70031/149‑1 (MQ=255) ggCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcag > 1:42516/1‑149 (MQ=255) ggCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcag < 4:337246/149‑1 (MQ=255) gCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcagg < 3:156037/149‑1 (MQ=255) ccGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGGCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtac < 6:417330/149‑1 (MQ=255) cGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtaca < 1:381397/149‑1 (MQ=255) gAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacag < 5:200794/149‑1 (MQ=255) gAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacag < 5:179648/149‑1 (MQ=255) aGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacagg > 2:292239/1‑149 (MQ=255) gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGtt < 6:342199/111‑1 (MQ=255) gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGtt > 5:342199/1‑111 (MQ=255) gcgAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAacca > 5:315077/1‑149 (MQ=255) aGCCACGCCCACGGTTCAGTGGTTGCCGGGCACGGTGAAGTGGGGTCTGGCCAAAAGTCATACCGGGGTTTCCAGAGCGGCGTCGGTACGAACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCg < 5:257830/149‑1 (MQ=255) cacggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcg > 3:250576/1‑149 (MQ=255) acggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgt > 7:197030/1‑149 (MQ=255) ccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta > 3:23392/1‑149 (MQ=255) gTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGa < 4:250576/149‑1 (MQ=255) gCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtc > 4:267834/1‑130 (MQ=255) gCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtc < 3:267834/130‑1 (MQ=255) aGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTgg < 7:255805/149‑1 (MQ=255) ggCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCt < 7:151760/149‑1 (MQ=255) aCGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGaa < 5:114925/149‑1 (MQ=255) ggTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAaca > 3:205669/1‑149 (MQ=255) aaGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAg < 4:23392/149‑1 (MQ=255) gTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCAcc > 5:369450/1‑148 (MQ=255) gTCTGGGCAAAAGTCATAGAGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCAcc > 4:387345/1‑148 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCgatg < 4:298699/146‑1 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCgatg > 3:298699/1‑146 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGACGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGatgatg > 1:44794/1‑149 (MQ=255) aaaaGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGt > 6:54190/1‑149 (MQ=255) aaGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGt > 4:385437/1‑147 (MQ=255) gTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAgg < 5:54190/149‑1 (MQ=255) gTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAgg < 4:205669/149‑1 (MQ=255) gCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAg < 6:369450/148‑1 (MQ=255) gCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGc > 1:155360/1‑149 (MQ=255) ggcgcggcgTGCGTACCGACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta < 2:152032/81‑1 (MQ=38) ggcgcggcgTGCGTACCGACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGta > 1:152032/4‑84 (MQ=38) cggcgTCGGTACGCACGGC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCt < 8:197030/149‑1 (MQ=255) cgTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgc < 1:292239/149‑1 (MQ=255) gTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgcgc < 3:387345/149‑1 (MQ=255) ggTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCtt > 5:369553/1‑149 (MQ=255) gcacgcC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCa < 7:37455/96‑1 (MQ=255) gcacgcC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCa > 8:37455/1‑96 (MQ=255) | GGGCTCAGGGTACAGGCACTGAGCAAGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCC‑GCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACA‑CCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTT > NC_002947/4065841‑4066131 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |