Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,114,353 | A→G | 7.7% | intergenic (+100/+46) | PP_3619 → / ← ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,114,353 | 0 | A | G | 7.7% | 149.5 / 2.8 | 53 | intergenic (+100/+46) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor |
Reads supporting (aligned to +/- strand): ref base A (29/19); new base G (2/2); total (31/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
ACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGC > NC_002947/4114208‑4114499 | accaccGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATAc < 8:170462/149‑1 (MQ=255) ccaccGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCCTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATAcc > 5:13094/1‑149 (MQ=255) caccGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCt < 3:87199/149‑1 (MQ=255) gcggAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCG‑CCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTggac > 7:311347/1‑147 (MQ=21) gAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCG‑CCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTggacgct < 8:311347/149‑6 (MQ=18) aGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTg < 6:310605/149‑1 (MQ=255) cGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGcc > 1:98521/1‑149 (MQ=255) cTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGgc > 2:238417/1‑149 (MQ=255) cTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGgc > 6:378922/1‑149 (MQ=255) tAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGgcg > 1:277566/1‑149 (MQ=255) gAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGcc > 8:207496/1‑149 (MQ=255) tCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACTGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAg > 1:73704/1‑149 (MQ=255) tCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAg > 2:263020/1‑149 (MQ=255) agcTGATGTGTTTAGGATGATACCGCTATGGGCGTGGATGCCAACGCGCCACGCCAGGGTCCAGTGTTGCGCCACAGTTCTCAACAGCGGTGAAAAACGTGTGG‑CGGTGGGTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGaa < 8:244043/147‑1 (MQ=255) accTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCCGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTCCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGaa < 5:207919/149‑1 (MQ=255) ccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAAc < 5:378922/149‑1 (MQ=255) cTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACt > 5:192215/1‑149 (MQ=255) cTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGAGATGATTGGGCGCAGCGCCTGTCAGGCGAACt > 6:290323/1‑149 (MQ=255) tATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGgc > 3:396666/1‑104 (MQ=255) tGCGCCTGGAGGGCAACGCGGCAAGCCAGCGTCCACAGTTTCGCCACATATCTCAAGAGCGTTGCAATACCTGGGG‑CGCGGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGcttct‑t < 2:98521/148‑1 (MQ=255) gcCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAg < 6:192215/149‑1 (MQ=255) ccTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCCTG‑CAGCTTAT‑Tg > 3:223043/1‑145 (MQ=255) ggATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGt > 7:220751/1‑149 (MQ=255) cAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGAt > 5:364591/1‑147 (MQ=255) aaCGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCt > 5:161823/1‑97 (MQ=255) aCGCGGCAACCCAGCGTCCACACGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTCCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAgg > 1:180693/1‑149 (MQ=255) gcgGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGgcg > 5:233105/1‑149 (MQ=255) ggCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGgcg > 7:52477/1‑147 (MQ=255) gCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCCAGCTTCT‑TGTAGCTGTCGATCAGGCGCa < 1:238417/149‑1 (MQ=255) aaGCCAGCG‑CCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGt < 4:358230/134‑1 (MQ=14) aaGCCAGCG‑CCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGt > 3:358230/1‑134 (MQ=14) ccAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGc > 8:46713/1‑149 (MQ=255) cGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGAt > 4:119993/1‑148 (MQ=255) tCCACAGGTTCGGCACAGATATCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGTCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCaa < 3:317193/149‑1 (MQ=255) ccACAGGTTCGGCACCGAGCTCACGCGGGGTTCAATACCTGGGG‑CGGGGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg < 8:220751/149‑1 (MQ=255) cacaTGTTCGGCACATATCCAAATTGCGGTGCAATACCTGTGG‑GGGTGGGTTGCCGGCGATGTTTGGGCGCATCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCTATGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg < 1:263020/149‑1 (MQ=255) caGGTTCGGCACAGATCTCAAGAGCGGTGCATTACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAg < 4:378421/107‑1 (MQ=255) gTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTc > 8:190946/1‑149 (MQ=255) gCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑Tg < 5:68790/106‑1 (MQ=255) gCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑Tg > 6:68790/1‑106 (MQ=255) gCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCaa < 5:560/137‑1 (MQ=255) gCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCaa > 6:560/1‑137 (MQ=255) aGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCAt > 3:250810/1‑149 (MQ=255) tcAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTgg > 5:40461/1‑149 (MQ=255) aaGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCg > 4:58202/1‑65 (MQ=255) aaGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTc > 1:18176/1‑149 (MQ=255) aaGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTc < 7:190946/149‑1 (MQ=255) cGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGt < 2:18176/149‑1 (MQ=255) gTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGTTCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGt < 3:196306/110‑1 (MQ=255) gTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGACTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCATGt > 4:196306/1‑110 (MQ=255) tGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGt < 2:211160/109‑1 (MQ=255) tGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGt > 1:211160/1‑109 (MQ=255) cAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGc < 2:73704/149‑1 (MQ=255) | ACCACCGGCGGAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGG‑CGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTG‑CAGCTTCT‑TGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGC > NC_002947/4114208‑4114499 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |