New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5545321 =NA (NA)29 (0.810) 25/284 0.6 100% intergenic (‑461/+416) rpsF/rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
?NC_002947 = 5621245 0 (0.000)coding (19/774 nt) PP_4939 hypothetical protein

CAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGCGCC  >  NC_002947/5621101‑5621392
                                                                                                                                                |                                                                                                                                                   
caGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtct                                                                                                                                                  >  3:52229‑M2/1‑145 (MQ=255)
 aGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtcta                                                                                                                                                 <  2:113950‑M2/148‑5 (MQ=255)
  gCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtcta                                                                                                                                                 <  3:145727‑M2/147‑5 (MQ=255)
           gcaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgccagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAgc                                                                                                                                       >  8:48416‑M2/133‑148 (MQ=255)
             aGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGCTCGAAACTCTCAAGGGTGTCGTTGCGCAGATCGCACCGCCCACAACTGGTCCCGCCGAGCGTGACGTCACTtctatcaaacaaaag                                                                                                                                      <  4:60829‑M2/147‑16 (MQ=255)
             aGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaag                                                                                                                                      <  8:122741‑M2/147‑16 (MQ=255)
                 tattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCAcc                                                                                                                                  >  5:14253‑M2/127‑147 (MQ=255)
                   ttcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGa                                                                                                                               >  1:79844‑M2/125‑148 (MQ=255)
                         ggctgacctacccggatcagtcggcgaatgcttttctagagctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCt                                                                                                                         <  5:13021‑M2/30‑1 (MQ=255)
                         agagTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgtt                                                                                                                         <  1:40266‑M2/148‑29 (MQ=255)
                               ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttcttt                                                                                                                     <  6:35872‑M2/146‑33 (MQ=255)
                                    ccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGa                                                                                                              <  1:106463‑M2/41‑1 (MQ=255)
                                           tACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAACCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaa                                                                                                         <  6:166783‑M2/146‑45 (MQ=255)
                                            gtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGc                                                                                                      <  2:92872‑M2/49‑1 (MQ=255)
                                            aCCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaaca                                                                                                      >  4:145727‑M2/1‑101 (MQ=255)
                                            aCCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaaca                                                                                                      >  3:68803‑M2/1‑101 (MQ=255)
                                              cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacagg                                                                                                    <  6:180715‑M2/148‑50 (MQ=255)
                                              cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacagg                                                                                                    <  8:70171‑M2/148‑50 (MQ=255)
                                              cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacagg                                                                                                    <  2:106463‑M2/148‑50 (MQ=255)
                                                  gaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTcaa                                                                                                <  2:102101‑M2/55‑1 (MQ=255)
                                                  cgAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAAGTGGTCACGTCGAGCGTGAAGTCACTtctatcaatcaatagataacccactgttctttctagcgaaaaaaacaggcgc                                                                                                 >  8:69852‑M2/1‑95 (MQ=255)
                                                   gAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgc                                                                                               <  2:61493‑M2/148‑55 (MQ=255)
                                                     tgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTcaacaa                                                                                             >  1:8754‑M2/91‑148 (MQ=255)
                                                       tgcttttctatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAccc                                                                                           <  1:137380‑M2/60‑1 (MQ=255)
                                                             ggTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatg                                                                                     <  4:155552‑M2/148‑65 (MQ=255)
                                                              gtgtTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatgg                                                                                    >  1:1179‑M2/1‑83 (MQ=255)
                                                                 ttgtAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcgg                                                                                 <  1:58727‑M2/148‑69 (MQ=255)
                                                                    tAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggc                                                                                <  6:139593‑M2/146‑70 (MQ=255)
                                                                      atgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGa                                                                            <  7:136354‑M2/75‑1 (MQ=255)
                                                                        gtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgtgtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGaaa                                                                          <  7:63157‑M2/77‑1 (MQ=255)
                                                                            gtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGctc                                                                      <  2:79844‑M2/81‑1 (MQ=255)
                                                                             aaaCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcac                                                                     <  5:171141‑M2/148‑81 (MQ=255)
                                                                              gcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTAACGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCtt                                                                    <  4:107347‑M2/83‑1 (MQ=255)
                                                                                 tctcAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactctt                                                                 <  5:43943‑M2/148‑85 (MQ=255)
                                                                                  ctcAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcagtggcggcgaagtgttctctcttc                                                                <  8:182392‑M2/148‑86 (MQ=255)
                                                                                  atctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGttt                                                                <  8:168321‑M2/87‑1 (MQ=255)
                                                                                        cgtcatgggcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGCTTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAg                                                              <  6:34258‑M2/89‑1 (MQ=255)
                                                                                                gcatcctgtttgctgtgcgatagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGt                                                                  >  2:139181‑M2/48‑132 (MQ=255)
                                                                                                 gAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcgggggcaatggcggcgaagtgttcactcttctatacgtggtca                                                    >  3:44541‑M2/1‑48 (MQ=255)
                                                                                                 catcctgtttgctgtgcgatagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGtt                                                                 <  1:139181‑M2/86‑1 (MQ=255)
                                                                                                    cAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaa                                              >  1:113950‑M2/1‑45 (MQ=255)
                                                                                                         cGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgt                                         >  7:122741‑M2/1‑40 (MQ=255)
                                                                                                           gctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGcc                                        <  1:168153‑M2/111‑1 (MQ=255)
                                                                                                           aaCCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgc                                       >  2:40266‑M2/1‑38 (MQ=255)
                                                                                                                 ccACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacag                                 >  2:58727‑M2/1‑32 (MQ=255)
                                                                                                                              cgacgaGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccga                    >  5:139593‑M2/1‑19 (MQ=255)
                                                                                                                                gaagggcggggtgagCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGTCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCgg                  <  8:42087‑M2/133‑1 (MQ=255)
                                                                                                                                     gctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTggg             <  2:8754‑M2/138‑1 (MQ=255)
                                                                                                                                        gACGTCACGtctatcaaacaaaagaaaacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagggttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgg          >  8:164061‑M2/1‑9 (MQ=255)
                                                                                                                                          gtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCt         <  6:1762‑M2/142‑1 (MQ=255)
                                                                                                                                           tgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGa       <  4:130244‑M2/144‑1 (MQ=255)
                                                                                                                                               CTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACACTTGCGGGTGGGGCCTGAgcgc   >  5:16067‑M2/1‑148 (MQ=255)
                                                                                                                                                TCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGCGcc  >  7:22179‑M2/1‑148 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
CAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGCGCC  >  NC_002947/5621101‑5621392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.