New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	27 (0.450)	25/250	2.1	46.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	63 (1.060)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808030‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑g‑cgc‑‑cgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCA  >  NC_002947/5988765‑5988911                                                                                                                                                                                                                                                                                                               ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCGGGGAGGTGTTCGCCGGGACAGTTTCAGCGCCGGGGAGATCGAG‑CGC‑‑CGCCCGC                                                                                                                                                      >  5:32753/1‑149    gtGCAATGGGCGTAATTCGCGCGTTGGCGGTTAGGTTTTTGGCGGTAG‑GTTTTCAGCGCCTGGGAGGTGTTCGGCGGTTGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGC                                                                                                                                                    <  2:334805/146‑1     GGCAATGCGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGTGTTTTCAGCGCCTGGGAGGTGTTCGCCCGCGCAATTACAGCGCCTGGGAGGTGTACGCAGGGAGAGTTACAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCG                                                                                                                                                   >  1:85694/1‑149           GGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCCGGAGAGTTTCAGCGACTGGGAGATCGAG‑CCC‑‑CGACCGCGCGGCGCTTC                                                                                                                                            >  4:25916/1‑149                gatTTCGCGCGTTGGCGGGTAGGTGTTTGGCGGTAG‑GTTTTCAGCGGCTGGGAGGTGTTCGCCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGG                                                                                                                                       <  8:352106/146‑1                GAATTCGCGCTTTGGCGGGTAGGTGTTTGGAGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGACTGGGAGGTGTTCGCCGGGAGTGTTTCAGCTCCTGGGATATCGAG‑CCC‑‑CGCCCGAGAGGCGCTTCGCGGG                                                                                                                                       >  7:212661/1‑149                      GCGCTTTGGCGGGTTGGCCTTTGGCGGGAG‑GGTTTCAGCGCCTGGGAGGTGATCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTTGGAGATCGAGCCGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAAC                                                                                                                                  <  1:34914/149‑1                         CTTTGGCGGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGC                                                                                                                              <  4:173987/149‑1                                GGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACt                                                                                                                       >  1:150020/1‑148                                    AGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGCGATTTTCAGCGCCTGGGAGGTGTACGCCGGCACAGTTTCAGCGACTGGGATAACGAG‑CGC‑‑AGCGCGCTCGGCGCTTCGAGGGTAAACCAGC                                                                                                                              >  3:5470/1‑138                                         ggTGGCCGTAG‑GTTGTCATCGCCTGGGTGGTGTTAGCCGGGTGTTTTTCAGTGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC                                                                                                               <  8:212661/146‑1                                            GGCGGTTG‑GTTTTCAGCGCCTCGTAGGTTGTTGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGG                                                                                                            <  7:215019/148‑1                                                             CGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGCCTCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGcg                                                                                             <  1:114837/149‑3                                                                CTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCACGCGCGGCGCTTCGCGCGTAAACCCGCTCCTACGTTTCTTTCGGGCCAATTATTCATGCGGGAtt                                                                                        >  7:111563/1‑147                                                                        TGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTC                                                                                                                            >  4:84077/1‑105                                                                        TGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTC                                                                                                                            <  3:84077/105‑1                                                                                        TTCAGCGCCTTGGAGGTGTTCGCCGGGTGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGGTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCAt                                                                 <  6:32753/148‑2                                                                                            GCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTC                                                            <  3:25916/149‑1                                                                                            GCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTC                                                            >  5:116589/1‑149                                                                                              GCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGA                                                          >  5:37525/1‑149                                                                                                  GGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCT                                                                                                                             <  3:162924/78‑1                                                                                                  GGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCT                                                                                                                             >  4:162924/1‑78                                                                                                       GTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑GGCCCGCTCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGT                                                  <  8:111563/148‑1                                                                                                         GTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATT                                                                                                   <  3:289386/97‑1                                                                                                         GTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATT                                                                                                   >  4:289386/1‑97                                                                                                          TTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGT                                               <  6:371566/148‑1                                                                                                             GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGG                                                                                                             >  8:194420/1‑83                                                                                                             GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGG                                                                                                             <  7:194420/83‑1                                                                                                                                              CGC‑‑CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGG           <  6:34577/149‑1                                                                                                                                                   CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGG                    >  7:47643/1‑137                                                                                                                                                     CCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTG      <  3:309649/149‑1                                                                                                                                                       CGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGC    <  5:345174/149‑1                                                                                                                                                        GCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCC   <  1:251003/149‑1                                                                                                                                                         CGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCA  <  3:56844/149‑1                                                                                                                                                                                                                                                                                                               ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAG‑GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAG‑CGC‑‑CGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808030‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑g‑cgc‑‑cgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCA  >  NC_002947/5988765‑5988911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.