New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487006 =	55 (0.840)	11 (0.220)	10/214	4.8	18.8%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	52 (1.020)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGC  >  NC_002947/1486865‑1487150                                                                                                                                              |                                                                                                                                                 gCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTc                                                                                                                                            <  4:23993/148‑1 (MQ=255)    aaCCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCgg                                                                                                                                        <  6:226859/149‑1 (MQ=255)       cGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCa                                                                                                                                     >  7:101806/1‑149 (MQ=255)        gggTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCAc                                                                                                                                    >  8:96514/1‑149 (MQ=255)          gTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGc                                                                                                                                  <  2:142111/149‑1 (MQ=255)                ttCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCAGCAGCCCTTCGCGGGCACGCCCGCTc                                                                                                                            >  5:371138/1‑149 (MQ=255)                   aTGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCca                                                                                                                         >  3:220178/1‑149 (MQ=255)                    tGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCcac                                                                                                                        <  5:86897/149‑1 (MQ=255)                      gACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                                      <  2:176676/149‑1 (MQ=255)                       aCAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                     <  7:214230/149‑1 (MQ=255)                       aCAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                     >  6:329377/1‑149 (MQ=255)                         aaGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTTGTCTGCGCGGCAGCCCTTCGCCGGCACGc                                                                                                                                  >  8:313774/1‑134 (MQ=255)                            ggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg                                                                                                                <  5:329377/149‑1 (MQ=255)                              cGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAgcg                                                                                                              >  6:352813/1‑149 (MQ=255)                               gagaTTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAgcgc                                                                                                             >  7:106689/1‑149 (MQ=255)                                 gaTTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTg                                                                                                           >  6:227740/1‑149 (MQ=255)                                      tgGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCttt                                                                                                      <  8:101806/149‑1 (MQ=255)                                        gAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTgg                                                                                                    >  5:329392/1‑149 (MQ=255)                                        gAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCAGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTg                                                                                                     <  6:371138/148‑1 (MQ=255)                                          gCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAg                                                                                                  <  4:159408/149‑1 (MQ=255)                                                cgcgCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCg                                                                                            >  1:158436/1‑149 (MQ=255)                                                cgcgCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCg                                                                                            <  5:352813/149‑1 (MQ=255)                                                 gcgcCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGt                                                                                           <  5:227740/149‑1 (MQ=255)                                                   gcCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCAACCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTaa                                                                                         >  8:174015/1‑149 (MQ=255)                                                           aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCTCGCCCGCTCCCAGAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgtg                                                                                 <  2:312460/149‑1 (MQ=255)                                                           aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCTCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt                                                                                  <  1:288816/148‑1 (MQ=255)                                                           aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt                                                                                  <  2:158436/148‑1 (MQ=255)                                                             ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCCCCCCCCCGCCCCCAGGGTTTTCGCGGGCGGTGGAGGCGGGGTGATTTCTGgggg                                                                               >  5:29169/1‑149 (MQ=255)                                                             ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTATCGCTGGCGTTGGAGCCTGAGTAATTACTGTggg                                                                               >  8:91809/1‑149 (MQ=255)                                                             ttcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTACCCCAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTgg                                                                                >  2:278802/1‑148 (MQ=255)                                                              tcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgtg                                                                                 >  5:239342/1‑146 (MQ=255)                                                              tcttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgtg                                                                                 <  6:239342/146‑1 (MQ=255)                                                               cttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGa                                                                              <  4:350452/148‑1 (MQ=255)                                                               cttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGa                                                                              <  4:220178/148‑1 (MQ=255)                                                                    aCCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGACAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCACCCCCACCTTTAGCGCAGGCTTTGGAGCCTGCGTAATTCCTGAGTGAGCGGGc                                                                        >  6:90902/1‑149 (MQ=255)                                                                      cGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGt                                                                      <  8:88732/149‑1 (MQ=255)                                                                        gCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGc                                                                    >  2:238828/1‑149 (MQ=255)                                                                          cgcgCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGccc                                                                  <  6:329392/149‑1 (MQ=255)                                                                                      ggACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACCCCCCCACCCCCAGGTTTATCGCTGGCTGTGGAGCGTGCGGTAATCCAGTGGGAGCGGGCGGGCCCGCGCAGGGCCGc                                                      >  5:233533/1‑149 (MQ=255)                                                                                       gACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCa                                                     <  8:106689/149‑1 (MQ=255)                                                                                          cAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAAcg                                                  >  5:92394/1‑149 (MQ=255)                                                                                             gttgttCCTCAGCCACAACCTCCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTCCGCGGGCACGCCCGCTCCCACCGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCgg                                               <  7:174015/149‑1 (MQ=38)                                                                                              ttgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCt                                                                                               >  2:132706/1‑100 (MQ=255)                                                                                              ttgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCt                                                                                               <  1:132706/100‑1 (MQ=255)                                                                                                    cTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGTTGCGGCCCttc                                         <  7:91809/148‑3 (MQ=255)                                                                                                     tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACACGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGt                                       >  2:44924/1‑149 (MQ=255)                                                                                                       aGCCAGCGCCTGCATTGATGCTGGTTGGGCTGCGCGGCAGCCCTTCGCGGCCACGCCCGCTCCCCCCGGCTTAGCGCGGGCTTTGGAGCCTGCGTAATGCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGTTGCGGCCCttcgc                                       <  7:160098/147‑5 (MQ=25)                                                                                                             aTCCTTAATTGTTGTTGTTTGGTCTGCGCGGCAGCCGTTCGGGGGCACGCCGGCTCCCACTGTTTTTGGGCGGGTTTTGGAGCCGGCTTAATTCCTGTGGGTGCGGGGGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAttt                                 <  6:233533/147‑1 (MQ=255)                                                                                                             aTCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTtct                               <  1:238828/149‑1 (MQ=255)                                                                                                                        aTGCGGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggct                     <  8:225069/148‑1 (MQ=255)                                                                                                                                   gCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGgcgc         <  5:90902/149‑1 (MQ=255)                                                                                                                                    cTGCGCGGCAGCCCTTCGCGGGCCCGCCCGCTCCCCAAGGTTTAGCGCGGGCGTTTGGGCCGGCGTAATTACGGGGGGAGCGGGCGGGCCCGCGAAGGGCCGCCACGCGGGCCAGGGGTTATTTATATTGCTGGGTGGCAGCCCGCGcc        >  2:125216/1‑149 (MQ=255)                                                                                                                                       cgcgGCAGCCCTGGGCGGGCACGCCCGCTCCCCCTGGTTTCGCGCGGGGTTTGCCGCCTGCTTAATTCGTGTGGGCGCGGGGGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGt     <  6:29169/149‑1 (MQ=255)                                                                                                                                        gcgGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTAGCGCTGGCGTTGGGGCCTGCGTAATTGCGGGGGGGGCGGGCGTGCCCGCGAAGGGCCGCCACGCGGGCCGGGGTGTTTTTCTGTTGCTGGGTGGCGGCCGGCGCCGGTg    >  3:222476/1‑149 (MQ=255)                                                                                                                                          ggCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGGTTATCGCTGGCTTTGGAGCCTGCGGAATTCCTTTGGGCGCGGGCGTGCCCGCGAAGGGCCGCCACGCGGCCCTGGGGTTATTTCGATTGCTGGCTGGCACACCGCGCCGGTggc  >  8:355968/1‑149 (MQ=25)                                                                                                                                              |                                                                                                                                                 GCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGC  >  NC_002947/1486865‑1487150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.