| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 955,149 | 0 | A | G | 30.9% | 110.5 / 65.2 | 85 | intergenic (+103/‑210) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (27/31); new base G (12/14); total (39/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.51e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATT > NC_002947/955002‑955294 | gACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACaa < 1:70711/148‑1 (MQ=255)gACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAg > 6:115434/1‑149 (MQ=255)gACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAg > 8:110954/1‑149 (MQ=255) gCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 1:178054/149‑1 (MQ=255) gCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 6:59229/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 2:130788/149‑1 (MQ=255) aCCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTg > 4:200383/1‑147 (MQ=255) aCCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTa < 7:110954/149‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑c < 3:91131/149‑1 (MQ=37) cGGATGTGCTGATGACCTACGCACGCTGATACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑gg < 7:369384/149‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCT‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑gg < 6:390430/149‑1 (MQ=37) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑gg < 4:193851/149‑1 (MQ=38) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑gg < 7:68262/149‑1 (MQ=38) gATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGt < 3:252166/149‑1 (MQ=37) gATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGt < 3:200383/149‑1 (MQ=255) aTGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTTCAAGGTTCCTGTAGGAG‑C‑GGGtt > 5:278431/1‑149 (MQ=255) tgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TATTTTTATTTTTCTGTGCT‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑gg < 3:157075/148‑1 (MQ=18) tgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑Ac < 1:292744/149‑1 (MQ=255) tgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGa < 8:206521/149‑1 (MQ=255) cTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAagag < 3:103106/149‑1 (MQ=255) cTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTACTGTGCC‑GGCCTCTTCGCGGGTAAAACCCCGCCAAAAAGGTTGCAGTAGGTG‑C‑GGGTTT‑ACCCGGGAagag > 8:41795/1‑149 (MQ=255) gcggttttCACCAACACCCCGCCCCCTGTGCCGGGG‑‑TTTTTTTGGGGGG‑TTT‑‑‑‑‑TTTTCCTGGGCC‑GCCTTCTTCGGGGTTAAACCCGCTCATACAAGGTTCCTGTCGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGaaaaataaaaa < 8:214040/144‑1 (MQ=25) cccTTTTTCACAAAACCCCCGGCCCGTG‑GGGGGGG‑TTTTTTTTTGGGGGTTTT‑‑‑‑‑TTTTCCTGGGCC‑GCCCTCTCCGCGTCAAACCCCGCTCAAACATGTTCCTTGTCGCCG‑G‑GGTTTT‑ACCCGCGAAGAGGCCAGCACAGaaaaataaaa < 8:331184/148‑1 (MQ=255) ccTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGaaaaatcagg > 5:171222/1‑144 (MQ=255) ccTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGaaaaataaaaa > 5:393561/1‑149 (MQ=255) tGTTTCACGATAACGCCGTCCACTGTGCCGGGG‑TTTTTTTTTGGTGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAATGTTCCt < 8:185795/100‑1 (MQ=37) tGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt > 7:185795/1‑100 (MQ=255) aCGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTTAACCCGCAGCTAACAGGTTGCGGTAGGAG‑C‑GGGGTT‑TACCGCGAAGAGGGCCGCCCAGAAAAATAAAAATA‑CCAGAt > 8:18783/1‑149 (MQ=255) gAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑Accc > 7:42004/1‑110 (MQ=21) gAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑Accc < 8:42004/110‑1 (MQ=21) aCCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCCGGGCCTCTTCGCGGGTAAACCCGCTCCGACAAGGTTCCGGTAGGAG‑C‑GGGTTT‑TCCCGCGAAGAGGCCAGGACAGAAAAGTAAAAATA‑ACAGAttttg > 1:94684/1‑147 (MQ=37) cccGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTAGCGGGTTAAACCGCAACTAAAAAGGTACGGTTTGAGCC‑GGGTTT‑A‑CCGCGAAGAGGCCCCCACAGAAAAAAAAAAAAA‑AATGAATTTaaaa > 2:212701/1‑148 (MQ=255) aCTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGt > 1:183175/1‑91 (MQ=17) aCTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGt < 2:183175/91‑1 (MQ=17) cGGGT‑TTTTTTTTTGGTGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTATTCGCGTGTAAACCCGCTCCTACAAGGTTCCTGTAGTAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGaaaa < 5:115434/149‑1 (MQ=37) cGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGTTAACCCCGCTCCTACAAGGTTCCTGTTGGTG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAGTAAAAATA‑CCTGATTTTCAAAAAATAGATCTGaaaa < 2:94684/149‑1 (MQ=38) gggt‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTTTGCC‑GGCCTCTTCGCGGTTAAACCCGCTCCAAAAAGTTTCCTTTAGTAG‑C‑GGTTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCCTGATTTTCAAAAAATAGATCTGaaaa < 1:212701/149‑1 (MQ=37) tttttttttGGGGT‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGTTTAAACCCGATCCTAAAAGTTTCATTTAGTAG‑C‑GTTTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTc < 1:350494/148‑1 (MQ=37) ttttttttGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCCCGCCGACAAGGTTCGTGTAGGAG‑CGGGGTTT‑ACCCG‑GGAGAGGGCAGCACAGAAAAATAAAAATA‑ACTGATTTTAAAAAAAAAGATGAGAAAAtttgt > 8:164609/1‑146 (MQ=25) tttttttGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTCGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCta < 6:393561/148‑1 (MQ=255) ttttGGTGT‑TTT‑‑‑‑‑TTTTCCTGT‑CC‑GGGCTGTTTCGGGGTAAACCCGCCTCTAACATGTTTCTGTTTGGT‑C‑GGGTTTAACCCGCGAAGAGGTCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaata < 2:334230/148‑1 (MQ=255) ggggg‑TTT‑‑‑‑‑TTTTCCGTTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAATGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTc < 7:362125/139‑1 (MQ=255) ggtg‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTTTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACa < 8:362436/145‑1 (MQ=255) gggtgaaT‑‑‑‑‑TTTTCCTTTGCC‑GGCCTCTTCGCTGTAAAACCCTATCCAAAAATTTTCATTTAGTAG‑C‑GTTTTA‑ACCCGCTAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAAc < 5:239903/142‑1 (MQ=255) gggt‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTTTCCTGTAGTAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACa < 3:130161/148‑1 (MQ=255) ggg‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTTTCCTTTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATaaa < 3:315176/144‑1 (MQ=255) ggg‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAAACCGCTACTAAAAAGTTGCAGTACGAG‑C‑GGGTTT‑ACCCCCCAAGAGGCCACCACAACAAAAAAAAAAAA‑CCAGATTTTCAAAAAATATATAAGAAAAGTTATAaaaaaaaaa > 4:315176/1‑145 (MQ=19) cTGTGCC‑GGCCTCTTCGCGGGTTAACCCCCTCCTACAAAGTTACGGTTGGAG‑C‑CGGTTT‑TACCGCGAAGAGGCCCGCACAGAAAAATAAAAATA‑ACTGATTTTGAAAAAATAGATATGAAAAGTTATAATAAAAAAGGAAATTATACtt > 4:318948/1‑149 (MQ=255) cTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTAAAAGGTTCCTGTAGGAT‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCt < 7:18783/148‑1 (MQ=255) cc‑GGCCTCTTCGCGGTTAAACCCGCTCATACAATTTTCATTTAGGAG‑C‑GGTTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAg < 5:328298/149‑1 (MQ=38) ggCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAgg > 6:302673/1‑148 (MQ=255) cgcgGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCt < 5:302673/146‑1 (MQ=255) gcgGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGttt > 2:219305/1‑149 (MQ=255) gcgGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGttt > 7:317770/1‑149 (MQ=255) gggTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATc < 5:75339/141‑1 (MQ=255) gggTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATc > 6:75339/1‑141 (MQ=255) gggTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCg < 1:219305/149‑1 (MQ=255) tAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaat < 6:49300/109‑1 (MQ=21) tAAACCCGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaat > 5:49300/1‑109 (MQ=21) tAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATc > 2:211502/1‑125 (MQ=255) tAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATc < 1:211502/125‑1 (MQ=255) cccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAt > 3:60302/1‑149 (MQ=37) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑GCCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGAATTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 8:294081/1‑149 (MQ=37) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATa > 6:381874/1‑86 (MQ=17) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATa < 5:381874/86‑1 (MQ=17) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaa > 8:308346/1‑103 (MQ=21) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaa < 7:308346/103‑1 (MQ=21) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGc < 8:188615/130‑1 (MQ=37) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGc > 7:188615/1‑130 (MQ=37) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 2:86423/1‑149 (MQ=38) ccGCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 8:208071/1‑149 (MQ=38) ccGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCATCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCAc < 5:155396/145‑1 (MQ=255) ccGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCAc > 6:155396/1‑145 (MQ=255) cGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 1:189160/1‑149 (MQ=255) gCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGc > 3:192966/1‑128 (MQ=37) gCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGc < 4:192966/128‑1 (MQ=37) gCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGc > 3:261141/1‑141 (MQ=37) gCTCCTACAGGAACCTTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGc < 4:261141/141‑1 (MQ=37) cTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGAATCCTGTTTCGGCAGTATCTTCTGa > 4:14162/1‑149 (MQ=255) tACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAt > 2:280930/1‑149 (MQ=255) tACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAt > 1:234888/1‑149 (MQ=255) tACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAt > 1:229313/1‑149 (MQ=255) aCAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGc > 6:260468/1‑135 (MQ=255) aCAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGc < 5:260468/135‑1 (MQ=255) aCAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCAc > 6:106693/1‑137 (MQ=255) aCAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCAc < 5:106693/137‑1 (MQ=255) aaGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAtt > 1:227449/1‑147 (MQ=255) | GACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGG‑TTTTTTTTTGGGGG‑TAT‑‑‑‑‑TTTTCCTGTGCC‑GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAG‑C‑GGGTTT‑ACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATA‑CCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATT > NC_002947/955002‑955294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |