| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 42.1% | 75.5 / 123.7 | 108 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (31/31); new base T (23/22); total (54/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.32e-02 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 108 total aligned reads displayed.
GTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGT > NC_002947/1326976‑1327227 | gTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATc < 6:367455/149‑1 (MQ=17) gTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGaa > 4:346630/1‑149 (MQ=32) gTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGaa < 6:294097/149‑1 (MQ=32) tAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCACCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACCTTATTCCTGGTCACAACCTGGAAATGAGCAATCGC‑ATCGAAt > 2:187191/1‑149 (MQ=11) aaCAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATg > 5:163294/1‑149 (MQ=17) cAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGtt < 7:278979/149‑1 (MQ=32) cAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGGCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGtt < 3:51935/149‑1 (MQ=17) ggTAGCCGTAGGGTAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGAt < 3:338556/149‑1 (MQ=17) ggTAGCCGTAGGGGAACCTGCGGCTGGATTCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGa > 1:219407/1‑149 (MQ=17) ggTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGAt > 5:288640/1‑149 (MQ=32) gTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGAtt > 3:87456/1‑149 (MQ=17) gTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGAtt > 8:278680/1‑149 (MQ=32) cGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTgg > 6:108786/1‑149 (MQ=32) gTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGc < 6:53091/149‑1 (MQ=17) gTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTCCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGc > 8:220839/1‑149 (MQ=17) gTAGGGGAACCTGCGGCTGGA‑TAACCTCATTAATCTAAGACATCAGCCTGCTTATGAGCTACCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACATGGAAATGAGCATTCGC‑ATCGAATTTTGAtttattga > 7:274412/1‑144 (MQ=11) gggAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCtttt > 4:62874/1‑149 (MQ=32) ggAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCtttt < 7:234847/148‑1 (MQ=32) gAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTg > 1:237485/1‑148 (MQ=17) cTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGt > 8:217621/1‑145 (MQ=17) gCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTCGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATcc > 8:347990/1‑146 (MQ=17) gA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCtt > 1:362081/1‑148 (MQ=32) a‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCttt > 4:365401/1‑148 (MQ=17) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCt > 1:110783/1‑125 (MQ=32) tCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCt < 2:110783/125‑1 (MQ=32) cACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTaaa > 3:115188/1‑148 (MQ=17) cctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGc > 7:190465/1‑125 (MQ=32) cctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGc < 8:190465/125‑1 (MQ=32) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAAt > 5:273714/1‑149 (MQ=17) tcctTAATCGACGATATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGa < 7:67983/108‑1 (MQ=17) ctTAATCGACGACATCAGCCTGCTGATGGGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCg > 6:196126/1‑149 (MQ=17) ttAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCg > 7:190702/1‑148 (MQ=17) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCgg < 8:190702/147‑1 (MQ=17) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTg < 8:30970/123‑1 (MQ=32) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTg > 7:30970/1‑123 (MQ=32) aaTCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCgta < 5:108786/148‑3 (MQ=17) aTCGACGACATCAGCCTGCTGATTATCTCCCACAAGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCATAACCTTGAAATGAGCATTCGCTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGat < 1:100478/149‑1 (MQ=11) tCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTaaa > 3:225806/1‑138 (MQ=32) tCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGatat > 4:224840/1‑149 (MQ=32) tCGACGACATCAGCCTGCTGATGAGCTCCCACACGAAATGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCCGATCGTTCTTTAAAAATTCGGa < 7:59555/146‑1 (MQ=17) tCGACGACATCAGCCTGCTGATGAGCTCCCACACGAAATGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGa > 8:59555/1‑146 (MQ=17) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGGTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGATCCTGGAAATGAGCATTGGG‑ATGGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgt < 1:187191/149‑1 (MQ=11) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtg < 7:217621/148‑1 (MQ=17) gacgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgt < 3:346630/149‑1 (MQ=32) acgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgtg > 8:353721/1‑149 (MQ=32) cgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 5:389969/1‑149 (MQ=32) cgacATCAGCCTGCTGATGAGCTCCAACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATAGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATAtgt < 8:274412/147‑1 (MQ=17) gacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgat < 6:389969/149‑1 (MQ=32) acATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 4:63475/1‑147 (MQ=32) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGAt > 6:9455/1‑102 (MQ=17) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGAt < 5:9455/102‑1 (MQ=17) cATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTAAAAAATTCGGATATGTgata < 4:115188/148‑1 (MQ=17) aTCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAATTGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 5:86520/1‑145 (MQ=17) aTCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTga > 2:284939/1‑145 (MQ=32) cctatgttgatgaGATCCCACACTAATTTCTTTATTCATTGTCGAAGACGTTTTTCCTGGTCATAACCTGGAAATTAGAATTCGT‑ATCTAATGTTTATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatagata < 7:277424/141‑1 (MQ=11) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACATTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatagata > 1:278765/1‑146 (MQ=17) ctgctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGa < 6:163294/149‑1 (MQ=17) ctgctgATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCACTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGa < 6:288640/149‑1 (MQ=17) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCtttt > 2:297332/1‑100 (MQ=18) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCtttt < 1:297332/100‑1 (MQ=18) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAac < 2:278765/149‑1 (MQ=17) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc > 6:5998/1‑123 (MQ=32) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc < 5:5998/123‑1 (MQ=32) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGaa < 2:362081/148‑1 (MQ=32) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATAAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatagata < 2:251814/139‑1 (MQ=17) atgaGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATAAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgatagata > 1:251814/1‑139 (MQ=17) aGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAacac < 2:237485/148‑1 (MQ=17) cTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATc < 2:171201/74‑1 (MQ=34) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACt < 7:19385/139‑1 (MQ=17) tCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTCGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGt > 4:69175/1‑149 (MQ=17) ccACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGt > 2:21505/1‑77 (MQ=34) ccACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGt < 1:21505/77‑1 (MQ=34) cacaCGAATTTCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTc < 7:12722/149‑1 (MQ=17) acacGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa < 3:365401/149‑1 (MQ=17) aaTTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgct > 7:345392/1‑149 (MQ=17) aTTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAATTTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgctg < 4:87456/149‑1 (MQ=17) gCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 2:188703/1‑149 (MQ=32) cTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc > 7:316116/1‑103 (MQ=32) cTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTc < 8:316116/103‑1 (MQ=32) ttGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGa > 5:288156/1‑149 (MQ=17) gATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 3:349178/1‑145 (MQ=17) gATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 4:349178/145‑1 (MQ=17) gATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGa < 8:345392/147‑1 (MQ=17) aatCATTGTCGAAGACGTTTTTCCTCGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCa < 4:29911/147‑1 (MQ=17) aTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 4:318805/1‑147 (MQ=17) aTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGAc > 8:356567/1‑120 (MQ=32) aTTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGAc < 7:356567/120‑1 (MQ=32) ttCATTGTCGAAGACGTTTTTCCTGGCCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgat < 7:248574/109‑1 (MQ=12) ttCATTGTCGAAGACGTTTTTCCTGGCCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTgat > 8:248574/1‑109 (MQ=12) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 6:288156/148‑1 (MQ=17) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 4:223652/141‑1 (MQ=32) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 3:223652/1‑141 (MQ=32) cATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 1:73038/148‑1 (MQ=32) aTTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGc < 1:188703/148‑1 (MQ=32) tCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAg < 6:273714/148‑1 (MQ=17) cGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAgg < 3:224840/148‑1 (MQ=31) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAac > 2:305137/1‑115 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAac < 1:305137/115‑1 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGT‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGt > 6:97452/1‑148 (MQ=11) gAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGt > 4:228337/1‑148 (MQ=11) | GTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGA‑TCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTCGAAGACGTTTTTCCTGGTCAGAACCTGGAAATGAGCATTCGC‑ATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGT > NC_002947/1326976‑1327227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |