| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 97.1% | 107.3 / ‑3.5 | 34 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (15/18); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGt < 2:243464/148‑1 (MQ=255) tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGc > 6:137097/1‑149 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTa < 5:289291/149‑1 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGCGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTacac < 4:350060/149‑1 (MQ=255) aCGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTc > 8:136768/1‑148 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAg < 7:136768/149‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTAAAGAGGTTCC‑GGGCTCTTCGCGGGTAAA‑ACCGGTCCTACACACATTCCTc > 3:246014/1‑145 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAATATCtgt > 3:340940/1‑149 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 3:173536/1‑149 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGATCTTCGCGGGTAAA‑ACCGCTACTACACACATGCCTCAAGATAtgt > 7:137235/1‑149 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 3:303221/147‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 3:71614/147‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑ACCCCTCCTTCAAACATGCCTCAAGAtatttg > 2:367797/1‑143 (MQ=255) gtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt < 4:351507/149‑1 (MQ=255) tggtacggtTTATATCCACTAATGATTTATAAAATTTTTATGAACTAAGTTTTTGTAATATTTTTAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 4:317853/149‑1 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 2:22646/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGTGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 5:137097/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 5:186460/149‑1 (MQ=255) cTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 8:340291/1‑148 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTACTACAAACATGCCTCAAGATCTGTGCACTGTAGGATCGTGTTTAACcgcg > 7:202552/1‑148 (MQ=255) ctaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 7:340291/149‑1 (MQ=255) aagtttttGTAATATTTATAGAAGGGGTATTTGTTACTGAGGTGCC‑GGGCTCTTCGGGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg < 4:246014/145‑1 (MQ=38) ttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg > 3:367119/1‑148 (MQ=255) atatTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑ACCGCTCCTACACACATGCCTCAAGATGGGTGGACTGTAGGAGCGGGTTTAACCGCGAAATGGCCGGGACAGGTTTACTCGGAGGcc > 2:367450/1‑140 (MQ=255) atatTTATAGAAGGGGGATTTGTTACAGAGGGGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 1:367450/140‑1 (MQ=255) tttATTGATGGGGTTTTTTTTACAGCGGGGCG‑GGGCTCTTCGCGGTTAAA‑CCGGCTCCTACACAAATGCCTCAATATCTGTGCACTGTTGGTGGGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 8:137235/148‑1 (MQ=255) ttattcgAAGGGGTATTTGTTACA‑TCGTGCCGGGGCTTTGCGCGGTT‑AACCCCGCTCATACACACTTGCATCATGAGCTGTGCACTGTGGTTGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 4:173536/142‑1 (MQ=255) taGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc < 4:367119/148‑1 (MQ=255) taGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑ACCCCTGCTAAAAAAAAACCTAAAGATCAGTGCACAGTATGAGCGGGTTTACCCCCGAAACGGCCGGAAAAGGTTTACTCGGAGGCCGCAGTACCGAGGaaat > 6:344022/1‑147 (MQ=255) ggggtATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGTTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 1:367797/149‑1 (MQ=255) gggATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGTAAA‑ACCGCTGCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACACGTTTACTCGGACGCCCCAGTCCCGAGGAACGTgcgc > 4:360426/1‑147 (MQ=38) gagGTGCC‑GGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTa > 6:327529/1‑149 (MQ=255) gggCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 5:327529/149‑1 (MQ=255) cgGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCt < 4:340940/149‑1 (MQ=255) cgGGTAAA‑CCCGCGCCTACACACATGCCTCAAGATCGGTGCACTGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCCGTCCCGAGGAACTGGCGCAAGAACTGCCGAGTACGCGCTTCCTGCGGCGCt > 5:405642/1‑149 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCC‑GGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |