New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2301454	1 (0.010)	77 (1.150)	56/276	0.2	98.7%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

CCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301307‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  NC_002947/5545321‑5545468                                                                                                                                                                                                                                                                                                            CCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGTCAGCTT                                                                                                                                                      <  5:237803/149‑1   GTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCT                                                                                                                                                    <  2:369779/149‑1     GCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGTGGCCGCTTTGCGGCCCTATCGAGGGCAAGCCAGCTTCTc                                                                                                                                                   >  7:263041/1‑147      CAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTAT                                                                                                                                                  >  6:217988/1‑148         GCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                              >  2:66459/1‑149           TTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAAC                                                                                                                                             >  5:111697/1‑148           TTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAAC                                                                                                                                             >  3:249325/1‑148              GGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAA                                                                                                                                          <  6:93522/148‑1                 CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGA                                                                                                                                       >  8:369223/1‑148                      TGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGTCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACC                                                                                                                                  >  1:113608/1‑149                              GGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATAGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCT                                                                                                                         >  8:157673/1‑149                              GGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCAGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCT                                                                                                                         >  3:159194/1‑149                                   TATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTA                                                                                                                    <  7:369223/149‑1                                   TATGAAACAGACGCATGGATGACCTGTTGGCGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTA                                                                                                                    <  2:371719/149‑1                                    ATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAA                                                                                                                                           <  8:93228/125‑1                                     TGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGC                                                                                                                  <  6:111697/149‑1                                     TGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAG                                                                                                                   <  2:382403/148‑1                                       AAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAA                                                                                                                                    <  6:17174/129‑1                                       AAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAA                                                                                                                                    >  5:17174/1‑129                                            GACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGAATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAA                                                                                                           >  1:271928/1‑148                                               GCATGGATGACCTGTTGGTGTCGAGTCTGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACA                                                                                                       <  8:289272/149‑1                                               GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACA                                                                                                       <  5:217988/149‑1                                                             TTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCT                                                                                                                                                    >  8:82505/1‑91                                                             TTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCT                                                                                                                                                    <  7:82505/91‑1                                                               GGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAAT                                                                                       >  6:226323/1‑149                                                                 TGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGG                                                                                     <  2:113608/149‑1                                                                     GAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCCGCGTCTATAAAACAAAAGATAACCCACTGTTCTTTCTTGCG‑AAAAAACCCGGCGCGGGGGTGCAATTGAGGC                                                                                 >  6:255009/1‑149                                                                     GAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTATCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGC                                                                                 >  6:260618/1‑149                                                                     GAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGC                                                                                 >  7:87664/1‑149                                                                     GAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGG                                                                                  <  4:128383/148‑1                                                                      AGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGC                                                                                 >  5:374041/1‑148                                                                      AGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑‑AAAAAACAGGCGCGCGGGGTCAATGGCGGCG                                                                                >  7:55908/1‑148                                                                        TCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAA                                                                              <  7:202331/149‑1                                                                         ccGGCAAG‑CGGGGACAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑‑AAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                                            <  8:90525/147‑1                                                                          GGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGAAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAACG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                                            >  7:59806/1‑149                                                                            GCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTG                                                                           >  3:332811/1‑149                                                                             CAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  6:374041/149‑1                                                                             CAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  7:157673/149‑1                                                                             CAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  2:271928/149‑1                                                                                agcctGGAAAGGGCGGAATCGTAACCCAAGCGTGGGGACGCTGTGCTGCCCGATCGCGGGCAAGCCATCATCTCTCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCA                                                                       <  8:263041/144‑1                                                                                   GGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCAgat                                                                    >  1:341595/1‑146                                                                                   GGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  2:341595/144‑1                                                                                     GGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTA                                                                                                                    <  5:67627/100‑1                                                                                          GGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTAT                                                              <  4:332811/149‑1                                                                                           GGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGC                                                                                 <  4:340091/128‑1                                                                                           GGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGC                                                                                 >  3:340091/1‑128                                                                                            GCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAG                                                                                                      >  8:376558/1‑106                                                                                                    GTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCA                                                     >  2:94018/1‑147                                                                                                      AACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAA                                                                              <  3:27586/120‑1                                                                                                       ACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTATATCAAACAAAAGATAACCCACTGTTCTTTATAGCG‑AAAAAAACAGGCGCGCGGGGTCACTGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGC                                                 >  5:325197/1‑148                                                                                                         CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAG                                              >  6:358649/1‑149                                                                                                         CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAG                                              >  2:326331/1‑149                                                                                                         CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGC                                                 >  2:271936/1‑146                                                                                                         CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGC                                                 <  1:271936/146‑1                                                                                                              CGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑‑AAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC                                        <  8:55908/149‑1                                                                                                                  GGGCCGCTGTGCTGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCT                                            <  8:279257/142‑1                                                                                                                  GGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCT                                            >  7:279257/1‑142                                                                                                                   GGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGA                                     >  4:150317/1‑148                                                                                                                    GCCGCTGTGCGGCCCGATCTCGGGCAAGCCAGCTTATATAAAACAAAAGATAACCCACTGTTCTTTCTATCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTTACTCTTCTATACGTGGTTACAGCAAGCTGTGCCGACA                                   <  8:59806/149‑1                                                                                                                     CCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAG                                  <  5:226323/149‑1                                                                                                                     CCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTC                                                                                          >  1:141089/1‑93                                                                                                                     CCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTC                                                                                          <  2:141089/93‑1                                                                                                                        CTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGA                               <  4:249325/149‑1                                                                                                                           TGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAT                              <  5:260618/147‑1                                                                                                                           TGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAT                              <  5:255009/147‑1                                                                                                                              GGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGCGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGAAAGCTATGACAACAAGGATTAAC                          >  6:358311/1‑148                                                                                                                                 CCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC                       >  2:160350/1‑148                                                                                                                                  CGAGCGCGGGCAAGCAAGATTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAACACAGGCTCGCGGGGGCACTGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGTATTAACGCCGA                     <  6:325197/149‑1                                                                                                                                   GATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAT                    <  3:83566/149‑1                                                                                                                                     TCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGC                  >  6:143109/1‑149                                                                                                                                       GCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCA                >  6:296625/1‑149                                                                                                                                          GGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTT             >  3:65459/1‑149                                                                                                                                            CAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG           <  1:94018/149‑1                                                                                                                                              acgtcaCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGC         <  4:388082/143‑1                                                                                                                                              acgtcaCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGG          <  7:291576/142‑1                                                                                                                                               cgtcaCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTACCGCCGATGCCATTTGGGC         >  4:332249/6‑148                                                                                                                                                  AGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG           >  1:112500/1‑143                                                                                                                                                  AGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG           <  2:112500/143‑1                                                                                                                                                   GCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCTTGCTGTGaccac                                    <  2:388569/117‑6                                                                                                                                                   GCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCTTGCTGTGaccac                                    >  1:388569/1‑112                                                                                                                                                    CTTCTATCAAACAACAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   <  6:51672/149‑1                                                                                                                                                    CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   <  2:235574/149‑1                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCGCTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  7:95411/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  1:135575/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  <  2:178539/149‑1                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  4:169184/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  1:139895/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  3:68405/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  2:390380/1‑149                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   >  4:213869/1‑148                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   >  2:361892/1‑148                                                                                                                                                     TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   >  3:12463/1‑148                                                                                                                                                                                                                                                                                                            CCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAG‑CGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301307‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCG‑AAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  NC_002947/5545321‑5545468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.