| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,390 | 0 | T | C | 24.4% | 149.2 / 44.5 | 83 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (26/36); new base C (7/13); total (34/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC > NC_002947/196243‑196533 | ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGACGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 1:253868/1‑149 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt > 5:111152/1‑149 (MQ=34) aCGGCGAGCCCGTCGGTCACGGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 2:280004/148‑1 (MQ=11) aCGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 4:158330/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:41192/149‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 2:305410/149‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 4:109018/149‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCATGTCCAACGGCCATACGATTACCTTTGAAGCCGTCAAAACCCAGGGCAGCGTCGACTTc < 1:129781/147‑1 (MQ=11) gAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAccc < 2:62437/149‑1 (MQ=34) cGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCg < 7:215969/149‑1 (MQ=34) gTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGGTACCCTGATCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa < 6:114036/149‑1 (MQ=255) ggTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt > 5:330840/1‑148 (MQ=255) tCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:41957/1‑149 (MQ=34) tCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATg > 5:310219/1‑147 (MQ=255) cACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg > 3:26798/1‑149 (MQ=34) aCCGAACGCGG‑CGTGATCACTTACAACGTGACCCTGAGCAACCCTGCCCAGACTCAGCTGACCGTGACCCTGTCCAACTGCCAAACGATTACAGTTGAAGCCGGCAAAACCCAGGGCAGCGTCTACTTCCAGACCCCGGCGAATGACg < 4:237011/148‑1 (MQ=11) ccGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 6:111152/149‑1 (MQ=34) ccGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 2:361182/149‑1 (MQ=34) cGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAACAAGGGCAGCGTCGACTTCCAGCCACCGGCGAATGACGTc > 8:342340/1‑148 (MQ=11) aGGCGG‑AGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTaca < 6:324489/149‑1 (MQ=11) ggcgg‑cGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa < 2:360895/149‑1 (MQ=34) ggcgg‑cGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa < 2:253868/149‑1 (MQ=34) gcgg‑cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaac < 7:342340/149‑1 (MQ=255) gg‑cgTGATCAC‑TACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac < 5:314937/149‑1 (MQ=11) g‑cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac < 4:363361/149‑1 (MQ=34) cgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 7:73292/149‑1 (MQ=34) gTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg > 1:359425/1‑149 (MQ=34) gTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg > 6:250732/1‑149 (MQ=34) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:16076/149‑1 (MQ=34) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACAGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:203079/1‑149 (MQ=11) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 2:2929/1‑148 (MQ=255) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 2:359425/149‑1 (MQ=34) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 6:69115/149‑1 (MQ=255) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 8:324623/149‑1 (MQ=255) cTTACACCGGGACCCTGAGCAACCCTGCCCAGACGCCTGTGACCGGGACGCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCAAGGGCAGCGTCGACTTCCAGACCGCGGCGATTGACGTCTACATCAACGGTTCGACt < 3:129042/149‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg > 8:150820/1‑149 (MQ=34) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa < 3:38631/118‑1 (MQ=32) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa > 4:38631/1‑118 (MQ=32) ccGTCACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑gc < 8:282595/149‑2 (MQ=11) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑gtg > 5:161476/1‑149 (MQ=35) gACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GCGTCa > 8:228793/1‑149 (MQ=11) cccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACGCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCAc > 4:94820/1‑148 (MQ=37) ccTGACCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAAGCCGGCGAATGACCTCTACAACAACGGTTCGACTGTCA‑GTGTCCCCa > 8:236187/1‑149 (MQ=11) cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCAc < 2:196879/146‑1 (MQ=37) cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCAc > 1:196879/1‑146 (MQ=37) cttcAATCCTGCCCAGACGCCGGTGACAGTGACGCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGGAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTTCAAGAACTGTTCGACTGTCA‑GTGTCACCATc < 7:288254/145‑1 (MQ=11) aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATc < 4:26798/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCg < 5:179499/148‑1 (MQ=37) cAATCCTGCCCAGACGCCTGTGACAGTGACCCTGTCCAACGCCAAAACCATAAACGTTGAAGCCGGCAAAACCCACGGCAGCGTCGAATTCCAGACCACGGCGAAACACGTCAACAACAACCGTTAGACAGACA‑GTGTCACCATCgag > 8:288254/1‑148 (MQ=11) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAGCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGGGTCGATGTCGCGCCCCCGGCGATTGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCTCGATCGAGAACg > 2:143146/1‑149 (MQ=11) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACg < 2:1265/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACAATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACg > 8:331870/1‑149 (MQ=37) ccgaGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGTTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCAcc < 5:337903/146‑1 (MQ=255) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCATCTGTCACCATCGAGAACGCCACCGGCGGTAAt < 1:41957/149‑1 (MQ=255) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 4:294638/147‑1 (MQ=39) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 3:294638/1‑149 (MQ=39) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCGCCATCGAGAACGCCACCGGCGGTAATTTCGAg > 8:313925/1‑148 (MQ=38) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 7:313925/148‑1 (MQ=38) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATc > 3:350544/1‑120 (MQ=35) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATc < 4:350544/120‑1 (MQ=35) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCaa < 6:161476/149‑1 (MQ=37) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 2:192887/1‑149 (MQ=37) tCCAACGGCCAAACCATTACCGGTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc < 4:133800/148‑1 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt < 8:318584/140‑1 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt > 7:318584/1‑140 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa < 5:250732/149‑1 (MQ=37) cGGCCAAACTATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 7:331870/149‑1 (MQ=38) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCg < 6:167948/107‑1 (MQ=35) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCg > 5:167948/1‑107 (MQ=35) ccAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGTAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 7:267709/70‑1 (MQ=25) ccAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGTAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 8:267709/1‑70 (MQ=25) ccAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa > 2:8025/1‑149 (MQ=39) cAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 5:288259/86‑1 (MQ=255) cAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 6:288259/1‑86 (MQ=255) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCa < 7:236187/148‑1 (MQ=39) cGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATc > 6:303130/1‑148 (MQ=39) gCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCagc > 6:231242/1‑147 (MQ=39) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGa > 3:260381/1‑149 (MQ=39) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCg < 7:131009/125‑1 (MQ=38) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCg > 8:131009/1‑125 (MQ=38) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAGCGACTCGGt < 5:231242/149‑1 (MQ=37) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCg < 1:300293/115‑1 (MQ=39) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCg > 2:300293/1‑115 (MQ=39) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 7:150820/149‑1 (MQ=39) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac > 1:129129/1‑149 (MQ=39) | CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGG‑CGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCAC > NC_002947/196243‑196533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |